View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5512_low_1 (Length: 901)
Name: NF5512_low_1
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 10 - 760
Target Start/End: Original strand, 5774304 - 5775046
Alignment:
| Q |
10 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
109 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
110 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnnataactgacctgagtttctttaacagtgtatctctcaagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
210 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
310 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcggtcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
410 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggagggcatacgattggtgtaa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||| || ||||||||| |
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|
| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
5774795 |
T |
|
| Q |
510 |
gtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtctt |
609 |
Q |
| |
|
||||| |||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||| |
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|
| T |
5774796 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
5774895 |
T |
|
| Q |
610 |
ctctcttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccat |
709 |
Q |
| |
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|||| |||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || | |||||||||||| |
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| T |
5774896 |
ctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatccctaagcatctccat |
5774995 |
T |
|
| Q |
710 |
caccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
760 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5774996 |
caccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
5775046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 441 - 884
Target Start/End: Original strand, 5775102 - 5775545
Alignment:
| Q |
441 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggagggcatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
5775201 |
T |
|
| Q |
541 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaaattctcacaatatgtctcctt |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5775202 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaagttctcaccatatgtctcctt |
5775301 |
T |
|
| Q |
641 |
gaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatcctatacagctttgat |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5775302 |
gaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcgcgaagcatctccatcaccttcttccggatcctatacagctttgat |
5775401 |
T |
|
| Q |
741 |
atttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaataaaaaacagtacccaagtataaatagaggcaaaacaaacaaattaat |
840 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5775402 |
atttcatcctccgaaaacaccattgtggagtcgctcttccaagtccctctaatagaaaacagtacccaagtataaatagaggcaaaacaaacaaattaat |
5775501 |
T |
|
| Q |
841 |
cataactgttatgcaaataataacagtgtaaattttgtttagac |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775502 |
cataactgttatgcaaataataacagtgtaaattttgtttagac |
5775545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 170 - 884
Target Start/End: Original strand, 5768189 - 5768892
Alignment:
| Q |
170 |
ataactgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatctt |
269 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
5768189 |
ataactgacctgagtttctttaacggtgtatctctcgagtaaggttttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatctt |
5768288 |
T |
|
| Q |
270 |
acattaaccagcaattcagcctcctgcaagcacgcacacactaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcggtcg |
369 |
Q |
| |
|
|| |||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| | | |
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|
| T |
5768289 |
acgttaaccagcaattcagcctccttcaagaacgcatacactaacaacggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat-- |
5768386 |
T |
|
| Q |
370 |
aatgatgaattacctgaaaaacttccaaatgatatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgat |
469 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
5768387 |
--tgatgaattacctgaaaaacttccaaatgaaatttggagtcgatttcagagag---------tgccatgttagtaaggctggtctggcaaacgatgat |
5768475 |
T |
|
| Q |
470 |
ggctctgtagacattgtcggagggcatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtca |
569 |
Q |
| |
|
||||||||||||||| |||||| |||||| |||||| ||||||| |||||||||||| ||||||| |||| ||| || ||||| ||||||||||||||| |
|
|
| T |
5768476 |
ggctctgtagacattctcggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtca |
5768575 |
T |
|
| Q |
570 |
gagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcga |
669 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||||||| |||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| | |
|
|
| T |
5768576 |
gagggattgtcctttttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaa |
5768675 |
T |
|
| Q |
670 |
aatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacaccatcgtgga |
769 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
5768676 |
aatctcctacgaggtaattcctatctctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacaccattgtgga |
5768775 |
T |
|
| Q |
770 |
gtcgctcttccaagtccctctaata--aaaaacagtacccaagtataaatagaggcaaaacaaacaaattaatcataactgttatgcaaataataacagt |
867 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768776 |
gtcgctcttctaagtccctctaataggaaaaacagaactcaagtataaacagaggcaaaataaacaaattaatcataactgttatgcaaataataacagt |
5768875 |
T |
|
| Q |
868 |
gtaaattttgtttagac |
884 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5768876 |
gtaaattttgtttagac |
5768892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
173 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
272 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
|
|
| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
273 |
ttaaccagcaattcagcctcct |
294 |
Q |
| |
|
||||||||||| || ||||||| |
|
|
| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 149
Target Start/End: Original strand, 5768137 - 5768171
Alignment:
| Q |
115 |
tactcattcgattagttacattctaaataacacaa |
149 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa |
5768171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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