View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5512_low_2 (Length: 727)

Name: NF5512_low_2
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5512_low_2
NF5512_low_2
[»] chr6 (15 HSPs)
chr6 (19-719)||(2106612-2107310)
chr6 (272-631)||(2098239-2098577)
chr6 (383-719)||(2098158-2098488)
chr6 (24-215)||(2098956-2099148)
chr6 (24-130)||(2059196-2059302)
chr6 (24-130)||(2063010-2063117)
chr6 (546-639)||(2047833-2047926)
chr6 (420-550)||(2088541-2088674)
chr6 (272-335)||(2083207-2083270)
chr6 (48-206)||(2088795-2088950)
chr6 (420-491)||(2048154-2048225)
chr6 (62-131)||(2048918-2048987)
chr6 (390-495)||(2054393-2054498)
chr6 (62-130)||(2055022-2055090)
chr6 (60-129)||(2042399-2042468)


Alignment Details
Target: chr6 (Bit Score: 630; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 19 - 719
Target Start/End: Complemental strand, 2107310 - 2106612
Alignment:
Q  19 aattgaacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatat 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107310 aattgaacatttgtaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatat 2107211  T
Q  119 tccttaaacattttcaaaagaacaaacatggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaagactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107210 tccttaaacattttcaaaagaacaaacatggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaagactt 2107111  T
Q  219 gtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagcagaagataaagtatgatcaaaatgatccccaaattccaatctaattgtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107110 gtaaccatttgtattttgacagtaaaaaataattaaacagtcttatttagcagaagataaagtatgatcaaaatgatccccaaattccaatctaattgtt 2107011  T
Q  319 ttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2107010 ttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgctaaatatataccctaggaatgtaaaagatgctgaac 2106911  T
Q  419 aagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaatacgcattgttgatgttccataaacctttcaactgttggaaaacaataa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2106910 aagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttgcaaaacaataa 2106811  T
Q  519 catgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatataaaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2106810 catgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatataaaa 2106711  T
Q  619 ctaaatgaattcaaaggagccnnnnnnnnnnnnnnnnnnaagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattat 718  Q
    |||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2106710 ctaaatgaattcaaaggagcc--ttttttttttttttttaagaaagggatagttccatagttgtttttaacaaagaaatcatgtcatcgcttagaattat 2106613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 272 - 631
Target Start/End: Complemental strand, 2098577 - 2098239
Alignment:
Q  272 aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataata 371  Q
    ||||||||||||||||||  |||| || |||||||||||||  ||||| ||||||||||||||| ||||||||||||||||  |||||||||            
T  2098577 aagataaagtatgatcaaggtgattcctaaattccaatctagatgtttccaacttcacaaagcaatgctcaattgagaaaggagcaacttaa-------- 2098486  T
Q  372 gaacaaattgctaaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaata 471  Q
                  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  2098485 --------------ataaataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatg 2098400  T
Q  472 cgcattgttgatgttccataaacctttcaactgttggaaaacaataac--atgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtag 569  Q
     |||||||||||||||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2098399 agcattgttgatgttccataaacctttcagctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtag 2098300  T
Q  570 caatgagtaaatcttaacaatatctaaccaattaggaaaggatataaaactaaatgaattca 631  Q
       ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2098299 tggtgagtaaatcttaacaatatctaaccaattagg-aagaatatgaaactaaatgaattca 2098239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 383 - 719
Target Start/End: Complemental strand, 2098488 - 2098158
Alignment:
Q  383 taaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaatacgcattgttga 482  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||    
T  2098488 taaataaataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatgagcattgttga 2098389  T
Q  483 tgttccataaacctttcaactgttggaaaacaataacat--gttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaa 580  Q
    |||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||    
T  2098388 tgttccataaacctttcagctgttgcaaaacaataacatatgttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtagtggtgagtaaa 2098289  T
Q  581 tcttaacaatatctaaccaattaggaaaggatataaaactaaatgaattcaaaggagccnnnnnnnnnnnnnnnnnnaagaaagggatagttccatagtt 680  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||| || ||||                  | ||| ||||||||||||| |||    
T  2098288 tcttaacaatatctaaccaattaggaa-gaatatgaaactaaatgaattcagagaagcctttcttttttct------aggaaggggatagttccatggtt 2098196  T
Q  681 gtttttaacaaagaaatcatgtcatcgcttagaattatc 719  Q
    ||||| |||||||||||| |||||||||| |||||||||    
T  2098195 gtttt-aacaaagaaatcgtgtcatcgctcagaattatc 2098158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 2099148 - 2098956
Alignment:
Q  24 aacatttgaaacctataggga-ctaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattcct 122  Q
    |||| ||||||| | |||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  2099148 aacaattgaaacttgtagggatctaagaaatttcttaaggtctaacctccgagaaagatggcccgatttgcttgagcatcagcttcagtgttatgttcct 2099049  T
Q  123 taaacattttcaaaagaacaaacatggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattgaaaagattgttcaaga 215  Q
    | |||||||||||||||| ||||| || |||||||||| |||  ||||||| ||||||||||||||| ||| ||||||| |||||||| ||||    
T  2099048 tcaacattttcaaaagaaaaaacacggcatttgttaacggttagggtaaaaatataaagacttgtaagctagaattgaagagattgtttaaga 2098956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 2059302 - 2059196
Alignment:
Q  24 aacatttgaaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattcctt 123  Q
    |||||||||||| |||||  | |||||||||||||||||||||||||| |||| || | |||   |||||||| |||| |||||||||||||||||||||    
T  2059302 aacatttgaaacatatagaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatattcctt 2059203  T
Q  124 aaacatt 130  Q
    | |||||    
T  2059202 acacatt 2059196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 2063117 - 2063010
Alignment:
Q  24 aacatttgaaacctataggga-ctaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattcct 122  Q
    |||||||||||| |||||| | |||||||||||||| | |||||||| | |||| |||| ||||| |||||||| |||| | |||||| |||||||||||    
T  2063117 aacatttgaaacatataggaaactaagaaaagtcttgacgtctaaccacgaagatagatagcccggtttgcttgagcattaacttcagtgttatattcct 2063018  T
Q  123 taaacatt 130  Q
    ||||||||    
T  2063017 taaacatt 2063010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 546 - 639
Target Start/End: Complemental strand, 2047926 - 2047833
Alignment:
Q  546 aaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaaccaattaggaaaggatata-aaactaaatgaattcaaaggagcc 639  Q
    |||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||| ||| |||||  || ||||||||| ||||||||||    
T  2047926 aaatgtataaaaaatggaaagtaacaatgagtaaatattaacaatatctaaccaattagg-aagaatatattaattaaatgaatccaaaggagcc 2047833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 420 - 550
Target Start/End: Complemental strand, 2088674 - 2088541
Alignment:
Q  420 agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaatacgcattgttgatgttccataaacctttcaactgttggaaaa-caataa 518  Q
    ||||||||| | || | |||||||||||||| || |||||| |||||||||  ||||||| |||||| ||| |||| || |||||||| |||| ||||||    
T  2088674 agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa 2088575  T
Q  519 c--atgttggtaaattgtttagaaaagaaaaatg 550  Q
    |  || || ||| |||||||||||||||||||||    
T  2088574 catatcttagtatattgtttagaaaagaaaaatg 2088541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 2083270 - 2083207
Alignment:
Q  272 aagataaagtatgatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagca 335  Q
    |||| ||||||||||||||||||| | ||||| ||||| ||||||||||||||| |||||||||    
T  2083270 aagaaaaagtatgatcaaaatgattctcaaataccaatgtaattgttttcaactccacaaagca 2083207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 2088950 - 2088795
Alignment:
Q  48 agaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattttcaaaagaacaaacat 147  Q
    ||||||||||| |||||| |||||| ||| ||| |||| | |||||||| ||||||||||||| ||||  ||||||||||| || |||| ||  ||||||    
T  2088950 agaaaagtcttgaggtctcacctccgagatagacggcctggtttgcttgagcatcagcttcagtgttaagttccttaaacaattacaaagga--aaacat 2088853  T
Q  148 ggtatttgttaacagttgaggtaaaagtataaagacttgtaatctataattgaaaagat 206  Q
    | |||||||| |||  |||| ||||  ||||| || ||||| |||| ||||||| ||||    
T  2088852 gttatttgtttaca-atgagataaatatataaggagttgtattctaaaattgaagagat 2088795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 420 - 491
Target Start/End: Complemental strand, 2048225 - 2048154
Alignment:
Q  420 agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaatacgcattgttgatgttccata 491  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||||  ||  |||||||| |||||||    
T  2048225 agtgaaagttatctgctagctccaaagcctcatcgcataagttccttaaacgcgggttgttgattttccata 2048154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 2048987 - 2048918
Alignment:
Q  62 gtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacattt 131  Q
    ||||||||||  ||| | |||||||| |||||||| ||||||||||||| |||| |||||||||| ||||    
T  2048987 gtctaacctcggagataaatggcccggtttgcttgagcatcagcttcagtgttacattccttaaatattt 2048918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 390 - 495
Target Start/End: Complemental strand, 2054498 - 2054393
Alignment:
Q  390 ataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaatacgcattgttgatgttcca 489  Q
    |||||||||||||||    |||||||||  |||||||| | ||| | |||| ||||||||||||||| ||||||| |||||||   |||||||| |||||    
T  2054498 ataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaatactggttgttgattttcca 2054399  T
Q  490 taaacc 495  Q
    | ||||    
T  2054398 tgaacc 2054393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 2055090 - 2055022
Alignment:
Q  62 gtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacatt 130  Q
    |||||||||| ||||  ||| ||||| |||||||| ||||||||| ||| |||| ||||||||||||||    
T  2055090 gtctaacctcgaagattgatagcccggtttgcttgagcatcagctccagtgttaaattccttaaacatt 2055022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 2042468 - 2042399
Alignment:
Q  60 aggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatattccttaaacat 129  Q
    ||||||||||||  |||  ||| |||||||||||||| |||||||| |||  |||| |||||||||||||    
T  2042468 aggtctaacctcggagattgatagcccgatttgcttgagcatcagcctcaatgttaaattccttaaacat 2042399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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