View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512_low_3 (Length: 628)
Name: NF5512_low_3
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 16487767 - 16488193
Alignment:
| Q |
1 |
gtcgagtgagatgaatggggcaatacaccaattcacccaatttcattttcaaccacaagtgaaacagcgttcatttccgtattcagagaaacagcgttct |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16487767 |
gtcgggtgacatgaatggggcaatacaccaattcacccaatttcattttcaaccacaagtgaaacagcgttcatttccgtattcagagaaacagcgttct |
16487866 |
T |
|
| Q |
101 |
gaatctaaatttctagggtttgcggaatcaatcgagcaattcagcaatggcgatgaggagattctacagcgagatcaaggggaagaaagttaccgaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16487867 |
gaatctaaatttctagggtttgcggaatcaatcgagcaattcagcaatggcgatgaggagattctacagcgagatcaaggggaagaaagttaccgaactc |
16487966 |
T |
|
| Q |
201 |
cccgaacacgtgaaaccgatgctttcattcaattacatcaagaattccatcaagaaaggtttggataattacggtgaaaagtacatcgaaactgattctc |
300 |
Q |
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| T |
16487967 |
cccgaacacgtgaaaccaatgctttcattcaattacatcaagaattccatcaagaaaggtttggataattacggtgaaaagtacatcgaaactgattctc |
16488066 |
T |
|
| Q |
301 |
tcacacctctctaccatgttctttatggtggtatggctttctcttaccttgttgctcttcccaatgagcgtcgtcatctcgctcataaagagcacgctga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16488067 |
tcacacctctctaccatgttctttatggtggtatggctttctcttaccttgttgctcttcccaatgagcgtcgtcatctcgctcataaagagcacgctga |
16488166 |
T |
|
| Q |
401 |
atctcatcactgattcagattcaggtg |
427 |
Q |
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| T |
16488167 |
atctcatcactgattcagattcaggtg |
16488193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 557
Target Start/End: Complemental strand, 26611674 - 26611634
Alignment:
| Q |
517 |
aaaagcgattttgaagacttaaaattgattttggtatgttt |
557 |
Q |
| |
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| T |
26611674 |
aaaagtgattttgaagacttaaaattgatttttgtatgttt |
26611634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 552 - 587
Target Start/End: Original strand, 16488232 - 16488267
Alignment:
| Q |
552 |
atgttttgtggttcctgattggattcaattttgcct |
587 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
16488232 |
atgttttgaggttcctgattggattcaattttgcct |
16488267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 556
Target Start/End: Original strand, 30592985 - 30593027
Alignment:
| Q |
514 |
gctaaaagcgattttgaagacttaaaattgattttggtatgtt |
556 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
30592985 |
gctaaaagtgattttgaagacttaaaattgctttcggtatgtt |
30593027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 557
Target Start/End: Original strand, 35728867 - 35728907
Alignment:
| Q |
517 |
aaaagcgattttgaagacttaaaattgattttggtatgttt |
557 |
Q |
| |
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||||| ||||||||||| |||||||||||||||| |||||| |
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|
| T |
35728867 |
aaaagtgattttgaagaattaaaattgattttggcatgttt |
35728907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 554
Target Start/End: Complemental strand, 41364731 - 41364691
Alignment:
| Q |
514 |
gctaaaagcgattttgaagacttaaaattgattttggtatg |
554 |
Q |
| |
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|||||||| |||| |||||| |||||||||||||||||||| |
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| T |
41364731 |
gctaaaagtgattatgaagaattaaaattgattttggtatg |
41364691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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