View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512_low_4 (Length: 587)
Name: NF5512_low_4
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 24 - 577
Target Start/End: Original strand, 866458 - 867011
Alignment:
| Q |
24 |
atggaatacaaccaatagaaacaacaattaaaaaacataaaataataagcagaattttgaattccaacagcagcaacagcggcgtatgtaaaaagggagg |
123 |
Q |
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| T |
866458 |
atggaatacaaccaatagaaacaacaattaaaaaacataaaataataagcagaattttgaattccaacagcagcaacagcggcgtatgtaaaaagggagg |
866557 |
T |
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| Q |
124 |
aagctgtgattgggaggcaggaaaagaggagacgttcgagtacgacgacgatagcggggttttcgaggaggaggaatttgaattgaagagaagaccagat |
223 |
Q |
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| T |
866558 |
aagctgtgattgggaggcaggaaaagaggagacgttcgagtacgacaacgatagcggggttttcgaggaggaggaatttgaattgaagagaagaccagat |
866657 |
T |
|
| Q |
224 |
acttataaggaaggtagtgtgtgcggtgaggaaagaagagagaattgttaaggtaagatttgaattgaaggtggtgtataaagaaaaagaggaggtgaga |
323 |
Q |
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| T |
866658 |
acttataaggaaggtagtgtgtgcggtgaggaaagaagagagaattgttaaggtaagatttgaattgaaggtggtgtataaagaaaaggaggaggtgaga |
866757 |
T |
|
| Q |
324 |
aagaaagtgaattgagaaaggattagggttaagtgaagagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccga |
423 |
Q |
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| T |
866758 |
aagaaagtgaattgagaaaggattagggttaagtgaagagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccga |
866857 |
T |
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| Q |
424 |
tgattaaggtggttgtgacggtggtggaagagaggtcgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgt |
523 |
Q |
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| T |
866858 |
tgattaaggtggttgtgacggtggtggaagagaggtcgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgt |
866957 |
T |
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| Q |
524 |
agggtttttgagagatctggaggaggaggatgatgatgtggttgaagatgatga |
577 |
Q |
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| T |
866958 |
agggtttttgagagatctggaggaggaggaggatgatgaggttgaagatgatga |
867011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 24 - 577
Target Start/End: Original strand, 1227735 - 1228288
Alignment:
| Q |
24 |
atggaatacaaccaatagaaacaacaattaaaaaacataaaataataagcagaattttgaattccaacagcagcaacagcggcgtatgtaaaaagggagg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1227735 |
atggaatacaaccaatagaaacaacaattaaaaaacataaaataataagcagaattttgaattccaacagcagcaacagcggcgtatgtaaaaagggagg |
1227834 |
T |
|
| Q |
124 |
aagctgtgattgggaggcaggaaaagaggagacgttcgagtacgacgacgatagcggggttttcgaggaggaggaatttgaattgaagagaagaccagat |
223 |
Q |
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| T |
1227835 |
aagctgtgattgggaggcaggaaaagaggagacgttcgagtacgacaacgatagcggggttttcgaggaggaggaatttgaattgaagagaagaccagat |
1227934 |
T |
|
| Q |
224 |
acttataaggaaggtagtgtgtgcggtgaggaaagaagagagaattgttaaggtaagatttgaattgaaggtggtgtataaagaaaaagaggaggtgaga |
323 |
Q |
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| T |
1227935 |
acttataaggaaggtagtgtgtgcggtgaggaaagaagagagaattgttaaggtaagatttgaattgaaggtggtgtataaagaaaaggaggaggtgaga |
1228034 |
T |
|
| Q |
324 |
aagaaagtgaattgagaaaggattagggttaagtgaagagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccga |
423 |
Q |
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| T |
1228035 |
aagaaagtgaattgagaaaggattagggttaagtgaagagagatgaaggcaggttgtttgaaattgagaaggtcgaggatgtaggagatcatgaggccga |
1228134 |
T |
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| Q |
424 |
tgattaaggtggttgtgacggtggtggaagagaggtcgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228135 |
tgattaaggtggttgtgacggtggtggaagagaggtcgaggatgaagagtatggcggggataagggaaattgcgattagggtattgtgggagaatgttgt |
1228234 |
T |
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| Q |
524 |
agggtttttgagagatctggaggaggaggatgatgatgtggttgaagatgatga |
577 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
1228235 |
agggtttttgagagatctggaggaggaggaggatgatgaggttgaagatgatga |
1228288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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