View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5513-Insertion-2 (Length: 631)
Name: NF5513-Insertion-2
Description: NF5513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5513-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 22286447 - 22286705
Alignment:
| Q |
8 |
aaaggtaatgcagatgctactagaaaggcttctgcttatcctagactgtctacttctctcctcctatgcttgagagttttctgtgacgcggcatatgtaa |
107 |
Q |
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| T |
22286447 |
aaaggtaatgcggatgctactagaaaggcttctgcttatcctagaccgtctgcttctctccttc-atgttt--gagttttttgtgacgcggcatatgta- |
22286542 |
T |
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| Q |
108 |
cgttacgtgaacgcagaaatattcagaggtataggt-gttgtaatatgaaccatatttatgtaaccaatgtatagtttctgttgtttttcctatgtttgt |
206 |
Q |
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| T |
22286543 |
----acgtgaacgcaaaaaagtttagaggtataggtggttgtaatgtgaaccgtatttatgtaagcaatgtatagtttctgctgttttttgtatggttgt |
22286638 |
T |
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| Q |
207 |
attttgaggcacattagaaaaattcagttgttttggtgcttaagttgtttattgttgttgaaccatgt |
274 |
Q |
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| T |
22286639 |
attttgaggcacattag-aaaattcagttcttgtggtccttaagttgtttattgctgttgaaccatgt |
22286705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 398 - 631
Target Start/End: Original strand, 22302694 - 22302921
Alignment:
| Q |
398 |
atttgaaactttatccttagtattatgcttttagaagataagttttggctgaaacataatatttggnnnnnnnnnnnnnnnnnnnnnnnnccatattgta |
497 |
Q |
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| T |
22302694 |
atttgaaactttatccatagtattatgcttttagaagataagttttggctgaaacataatatttggtttttttttaaaaaaaataaaaaaccatattgta |
22302793 |
T |
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| Q |
498 |
aaggaagaaagacaatcttgcaatgattcacttttaccatcaccaaaaatggaaaataaattcttacaaagattcacatgccatcatcactaagaatgga |
597 |
Q |
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| T |
22302794 |
aaggaagaaagacaatcttgcaatgattcactt--accatcaccaaaaatggaaaataaattcttacaa-gattcacataccatc---actaagaatgga |
22302887 |
T |
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| Q |
598 |
aaataaaaggaaaaacacatttgtcaatcatcca |
631 |
Q |
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| T |
22302888 |
aaataaaaggaaaaacacatttgtcaatcatcca |
22302921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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