View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5513-Insertion-3 (Length: 544)
Name: NF5513-Insertion-3
Description: NF5513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5513-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 87 - 544
Target Start/End: Complemental strand, 47654285 - 47653828
Alignment:
| Q |
87 |
tacacaattatacgggcacaattgaccgaattttattaccaaacttcgtttatctattgtttacggttgccgtttaattttcctttcataattggttgtt |
186 |
Q |
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| T |
47654285 |
tacacgattatacgggcacaattgaccgaattttattaccaaactttgtttatctattgtttacggttgccgtttaatttccctttcataattggttgtt |
47654186 |
T |
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| Q |
187 |
gttctaacagtttaattatgttggagatttatgaagagcgccgaaaataacaacaaaccaatgatctaggattacgagatcaaaaatcacatctccatat |
286 |
Q |
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| T |
47654185 |
gttctaacagtttatttatgttggagatttatgaagagcgccgaaaataacaacaaaccaacgatctaggattacgagatcaaaaatcatgtctccatat |
47654086 |
T |
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| Q |
287 |
aaaatctcaatgcattgggtatatgagtcttctcttgtatatatccgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtc |
386 |
Q |
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| T |
47654085 |
aaaatctcaatgcattgagtatatgagtcttctcttgcatatatctgacattaaattcattcatatgttgatacgagactaatcactcacacttgaagtc |
47653986 |
T |
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| Q |
387 |
aacaatcttccctcaagtgtggagctatatccaatacttgcatcaccattattaccggcataataacatgtctcctgactacactaacatgaagactttt |
486 |
Q |
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| T |
47653985 |
aacaatcttccctcaagtgtggacctatatccaatacttgcatcaccattattaccggcataataacatgtcttctgactacactaacatgaagactttt |
47653886 |
T |
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| Q |
487 |
gtagcaagtccaaacattgagatattcaatttcgctctctcaccaattaaaacttggc |
544 |
Q |
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| T |
47653885 |
gtagcaagtccaaacattgagatattcactttcgctctctcgccaattaaaacttggc |
47653828 |
T |
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