View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5513_low_1 (Length: 315)
Name: NF5513_low_1
Description: NF5513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5513_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 6395264 - 6395547
Alignment:
| Q |
18 |
ggttgtttctgtgagataacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatg |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6395264 |
ggttgtttctgtgagataaccaccacaaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagactagtaatg |
6395363 |
T |
|
| Q |
118 |
tgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6395364 |
tgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggcgaccaaagggaaat |
6395463 |
T |
|
| Q |
218 |
agatgatgagttttgtgagcaaagggaaacaatcaacaatatctgtcagactgttctcgaaaaaataaacacagtaacaactga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6395464 |
agatgatgagttttgtgagcaaagggaaacaatcaacaatgtctgtcagactgttctcgaaaaaataaacacagtaacaactga |
6395547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 258
Target Start/End: Original strand, 14821138 - 14821351
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||| || | || |||||||||||||||||||||| |
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|
| T |
14821138 |
aaggtttatagataccaaattaccaagacacaaacaaaaatcaacaacatgttgattatttagaaaataagtgctttgaagttccaaatgttgtatacat |
14821237 |
T |
|
| Q |
145 |
ggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaaatagatgatgagttttgtgagcaaaggga |
244 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||| |||||||||| ||||| | || |||| |||| | ||||| |||||| | |||||||||| | |
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|
| T |
14821238 |
ggagacttggataacagacgttgaattgtactaacaaagttagtctcattgttcttggggaccttagggcgacagatgttgagttctttgagcaaaggaa |
14821337 |
T |
|
| Q |
245 |
aacaatcaacaata |
258 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14821338 |
aacaatcaacaata |
14821351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 6399658 - 6399818
Alignment:
| Q |
18 |
ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta |
114 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||| || | |
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|
| T |
6399658 |
ggttgtttctgtgagataacaacaagcaccaaggtttacagacaccaaattactaagaaacacagagaaatcaacaacatgttgatcattta---aatca |
6399754 |
T |
|
| Q |
115 |
atgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaa |
178 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6399755 |
gtgttacaaagttccaaatattgtatacatggagacttggataacagacggtgaattgtattaa |
6399818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 6426912 - 6427147
Alignment:
| Q |
19 |
gttgtttctgtgagataa---caaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaa |
115 |
Q |
| |
|
|||||||||||||||| | |||||| |||||||||||| ||||| ||||||| ||||||| | | ||| ||||| ||||||| ||||| ||| | |
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|
| T |
6426912 |
gttgtttctgtgagatgatgacaaccactaaggtttatagacaccaacttaccaaaaaacaaacacatctcatcaacaagttgatcggttagaaaagaag |
6427011 |
T |
|
| Q |
116 |
tgtgacaaagttccaaatgttgtatacatggagacttggatagcagacggtgaattgtattaacgaagttagtctgattgtcataggtgaccaaagggaa |
215 |
Q |
| |
|
| || ||||||||||||||||||||||||| ||||||||| || || |||||||| ||||| |||||||| || ||| | ||||||||||| |
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|
| T |
6427012 |
tactacgaagttccaaatgttgtatacatggacacttggataacatacagtgaattgaattaatgaagttaggcttatt------gatgaccaaagggtg |
6427105 |
T |
|
| Q |
216 |
atagatgatgagttttgtgagcaaagggaaacaatcaacaat |
257 |
Q |
| |
|
|| || | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
6427106 |
atggaggttgagttgtttgagcaaagggaaacaatcaacaat |
6427147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 8913720 - 8913661
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
8913720 |
aaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcatt |
8913661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 6596597 - 6596546
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt |
96 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
6596597 |
aaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgt |
6596546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 29691119 - 29691002
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat |
144 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||| || |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| || |
|
|
| T |
29691119 |
aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat |
29691020 |
T |
|
| Q |
145 |
ggagacttggatagcaga |
162 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
29691019 |
ggagagttggataacaga |
29691002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 29718631 - 29718514
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat |
144 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||| || |||||||||||||||| ||| || || |||||| ||| ||||||||||||||| || |
|
|
| T |
29718631 |
aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtatatat |
29718532 |
T |
|
| Q |
145 |
ggagacttggatagcaga |
162 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
29718531 |
ggagagttggataacaga |
29718514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 29658604 - 29658487
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat |
144 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||| || |||||||||||||||| ||| | || || ||| ||| ||||||||||||||| | |
|
|
| T |
29658604 |
aaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtatatac |
29658505 |
T |
|
| Q |
145 |
ggagacttggatagcaga |
162 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
29658504 |
ggagagttggataacaga |
29658487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 33160945 - 33161014
Alignment:
| Q |
35 |
aacaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt |
104 |
Q |
| |
|
|||| |||| |||||||||||| |||||| | |||||||||||||||| || |||||||||||||||| |
|
|
| T |
33160945 |
aacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcatt |
33161014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 52093225 - 52093284
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt |
104 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| || |||||| || ||||||||| |
|
|
| T |
52093225 |
aaggtttatagacaccaaattaccaagaaccaaagacaacccaacaatatcttgatcatt |
52093284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 30827546 - 30827656
Alignment:
| Q |
45 |
aaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagtaatgtgacaaagttccaaatgttgtatacat |
144 |
Q |
| |
|
|||||||||||| || |||| | ||||| ||||||||| || |||||||||||||||| ||| || | || || ||| ||||||||||||||| || |
|
|
| T |
30827546 |
aaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtatatat |
30827645 |
T |
|
| Q |
145 |
ggagacttgga |
155 |
Q |
| |
|
||||| ||||| |
|
|
| T |
30827646 |
ggagagttgga |
30827656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 15091832 - 15091714
Alignment:
| Q |
18 |
ggttgtttctgtgagataacaac---cataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatttagacaagta |
114 |
Q |
| |
|
||||||||||||||||| || || ||| |||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||| | || || |
|
|
| T |
15091832 |
ggttgtttctgtgagattacgacaagcattaaggtttatagacaccaaattactaagaaatagagagaaatcaacaacatgttgatcatt---aaaacta |
15091736 |
T |
|
| Q |
115 |
atgtgacaaagttccaaatgtt |
136 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
15091735 |
gtgttacaaagttccaaatgtt |
15091714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 514373 - 514317
Alignment:
| Q |
48 |
gtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgttgatcatt |
104 |
Q |
| |
|
||||||||| | ||||| |||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
514373 |
gtttatagacaacaaatgaccaagaaacaatgacaaatccacaacatgttgatcatt |
514317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 51764106 - 51764046
Alignment:
| Q |
36 |
acaaccataaaggtttatagataccaaattaccaagaaacaaagagaaatcaacaacatgt |
96 |
Q |
| |
|
||||||| ||||||||| || |||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
51764106 |
acaaccactaaggtttatggacaccaaattactaagaaacaaagacaaatttacaacatgt |
51764046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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