View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-1 (Length: 826)
Name: NF5514-Insertion-1
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 46103447 - 46102895
Alignment:
| Q |
8 |
gatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttggcaagtaggatagtaattgagcctcat |
107 |
Q |
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| T |
46103447 |
gatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttgacaagtaggatagtaattgagcctcat |
46103348 |
T |
|
| Q |
108 |
tattggactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctccattatacctaaagaaagattgctcata |
207 |
Q |
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| T |
46103347 |
tattgaactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctccattatacctaaagaaagattgctcata |
46103248 |
T |
|
| Q |
208 |
gctttgcagtagtcttgataaacatccctgtataaaatatagctagtaagaacatgatttaataaaattatgaaacatgtatgaattgctaagaaaattc |
307 |
Q |
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| T |
46103247 |
gctttgcagtagtcttgataaacctccctgtataaaatatagctagtaagaacatgatttaataaaattatgaaacatgtatgaattgctaagaaaattc |
46103148 |
T |
|
| Q |
308 |
ttgaactttgatatttttgaagaaattaattttctttttctatagtactttaactatttacattcttctgtaataaattgttattgataaatttgacata |
407 |
Q |
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| T |
46103147 |
ttgaactttgatatttttgaagaaattaattttctttttctgtagtactttaactatttacattcttctgaaataaattgttattgataaatttgacata |
46103048 |
T |
|
| Q |
408 |
tacaaagaaacaaaaatttgtcttataagtgcagtttagatggtaaaaaatgcagagacatttgttgtgttaggatgcagtttttaatcagtatta-ccc |
506 |
Q |
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| T |
46103047 |
tacaaagaaacaaaaatttgtcttataagtgcagtttagatggtaaaaaatgcagagacatttgttgtgttgggatgcagtttttaatcagtattacccc |
46102948 |
T |
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| Q |
507 |
tctttttcccacttaatatgtgataagttaatttgtcactagactctttgaca |
559 |
Q |
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| T |
46102947 |
tctttttcccacttaatatgtgataagttaatttgtcactagactctttgaca |
46102895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 635 - 826
Target Start/End: Complemental strand, 46102818 - 46102627
Alignment:
| Q |
635 |
gacatttttatattacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattga |
734 |
Q |
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| T |
46102818 |
gacatttttatattacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattga |
46102719 |
T |
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| Q |
735 |
aaggaaagtgtctctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctgagc |
826 |
Q |
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| T |
46102718 |
aaggaaagtgtctctttccaaggaagcttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctgagc |
46102627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 22553440 - 22553624
Alignment:
| Q |
13 |
tggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttggcaagtaggatagtaattgagcctcattattg |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| || | || || ||||| || |||||||||| |
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| T |
22553440 |
tggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtgggtaataattaagtctcattattg |
22553539 |
T |
|
| Q |
113 |
gactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctccattatacctaaagaaag |
197 |
Q |
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| T |
22553540 |
atttattctcttcaaaaaaatctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaagaaag |
22553624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 648 - 823
Target Start/End: Original strand, 22553784 - 22553959
Alignment:
| Q |
648 |
tacccaaatttctcaaactcattgcccattgtgttgcacaaatagtctctgacaaggtttggtgatttttcatcagctgagaattgaaaggaaagtgtct |
747 |
Q |
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|||||||||| |||||| || | || | ||||||||| | |||||| | |||| |||||||| |||| ||| |||| |||||||| |||||||| | |
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| T |
22553784 |
tacccaaattcctcaaaatcttcccctaatgtgttgcaaaggtagtctttaacaatatttggtgagtttttctcatctgaaaattgaaaagaaagtgttt |
22553883 |
T |
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| Q |
748 |
ctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccacagtgctcccctgtttttctctg |
823 |
Q |
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| T |
22553884 |
ctttccatggaagttttgaggagaatcttccagtgaaactactagcataaccacaatgttctcctattttcctctg |
22553959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 733 - 802
Target Start/End: Original strand, 12873931 - 12874000
Alignment:
| Q |
733 |
gaaaggaaagtgtctctttccaaggaagtttggaagagaatctgccagtgaaactactagcataaccaca |
802 |
Q |
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|||| |||||||| || |||||||||||||||||||| ||||| ||| |||||||| ||||||||||||| |
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| T |
12873931 |
gaaaagaaagtgtttccttccaaggaagtttggaagaaaatcttccaatgaaactattagcataaccaca |
12874000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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