View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-10 (Length: 500)
Name: NF5514-Insertion-10
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 2555628 - 2556124
Alignment:
| Q |
11 |
cgacctctcctctttaccatcttgatccaacaagtttttattacatgattttattcttattttgttttcatccttcaactactacgtttgttctaacctc |
110 |
Q |
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| T |
2555628 |
cgacctctcctctttaccatcttgatccaacaagtttttattacatgattttattcttattttgtttgcatccttcaactactacgtttgttctaacctc |
2555727 |
T |
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| Q |
111 |
ttgcaattttcactgtttttcagttgagtaaataa------acattggttgttcatctttatttattgcagagttgttgacaagttttaggttattttcc |
204 |
Q |
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| T |
2555728 |
ttgcaattttcacagtttttcagttgagtaaataactataaacattggttgttcatctttatttattgcagaattgttgacaagttttaggttattttcc |
2555827 |
T |
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| Q |
205 |
ttcatggagtatcattttcagagggatgcatgtgtttatttattggctgcagagatatggcattgaagaaacataatgctaaatagagcaggnnnnnnnn |
304 |
Q |
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| T |
2555828 |
ttcatggagtatcattttcggagggatgcatgtgtttatttattggctgcagagatacggcattgaagaaacataatgctaaatagagcggaaaaaaaaa |
2555927 |
T |
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| Q |
305 |
-tcactacgtcttcacgaatttctctctctcccaaaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttg |
403 |
Q |
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| T |
2555928 |
atcactacgtcttcacgaatttctctctctcccacaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttg |
2556027 |
T |
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| Q |
404 |
ccgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgtttcactttctcaattggatagcaccac |
500 |
Q |
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| T |
2556028 |
ccgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgtttcactttctcaattggatagcaccac |
2556124 |
T |
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