View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514-Insertion-12 (Length: 470)

Name: NF5514-Insertion-12
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514-Insertion-12
NF5514-Insertion-12
[»] chr1 (2 HSPs)
chr1 (7-470)||(46201386-46201850)
chr1 (341-394)||(29547836-29547889)
[»] chr5 (5 HSPs)
chr5 (343-448)||(7823076-7823181)
chr5 (343-419)||(25214430-25214506)
chr5 (343-419)||(25278580-25278656)
chr5 (336-404)||(12026305-12026373)
chr5 (364-404)||(35105136-35105176)
[»] chr2 (3 HSPs)
chr2 (341-448)||(19912361-19912469)
chr2 (198-229)||(17319628-17319659)
chr2 (341-381)||(21294953-21294993)
[»] chr8 (1 HSPs)
chr8 (196-237)||(29185671-29185712)
[»] scaffold0505 (1 HSPs)
scaffold0505 (198-238)||(9235-9275)
[»] chr3 (4 HSPs)
chr3 (196-239)||(27543807-27543850)
chr3 (341-418)||(13100790-13100868)
chr3 (196-237)||(27547221-27547262)
chr3 (343-419)||(7873865-7873941)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 470
Target Start/End: Original strand, 46201386 - 46201850
Alignment:
Q  7 attaaaaacagcttcgtccttagacagaagaaaatacannnnnnnnnnnaatttactcattcagggcacgagaaaaaacgatacatccgttcgaattgat 106  Q
    |||||||||||||||||||||||||| |||||||||||           ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46201386 attaaaaacagcttcgtccttagacataagaaaatacatttttttttttaatttactcattcagggcacgagaaaaaatgatacatccgttcgaattgat 46201485  T
Q  107 aaatctaataagaatgcaatgaaggttaactccctcnnnnnnnnnnnnnnncaatgaaggttaacatagctctctatctgttatgaattaagttggtgga 206  Q
    ||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46201486 aaatctaataagaatgcaatgaaggttaactccctcaaaaaaaaagaaaaacaatgaaggttaacatagctctctatctgttatgaattaagttggtaga 46201585  T
Q  207 tgtccattcttgatcttccacattcttataacttttctatattgtatcaattttattggatgtctccgaagggacacattcttataacttttattagtga 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  46201586 tgtccattcttgatcttccatattcttataacttttctatattgtatcaattttattggatgtcttcgaagggacacattcttataacttttactagtga 46201685  T
Q  307 atgaatacttagtagtctttaactacatacatgc-atcattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttgt 405  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||    
T  46201686 atgaattcttagtagtctttaattacatacatgcgatcattcacttgcttatttgtattctataaataagatttatattttagtgtaaaaatatacttgt 46201785  T
Q  406 gaatagaataataccaaaactctcaccttctccatctttgattttgttctttatgtctcatttta 470  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46201786 gaatagaataataccaaaactctcaccttctccatctttgatcttgttctttatgtctcatttta 46201850  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 29547836 - 29547889
Alignment:
Q  341 atcattcacttgcttatttatattctataaataggacttatattttagtgtaaa 394  Q
    |||||||||||||| |||||| | ||||||||||||| |||||| || ||||||    
T  29547836 atcattcacttgctcatttatgtcctataaataggacctatattgtaatgtaaa 29547889  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 448
Target Start/End: Complemental strand, 7823181 - 7823076
Alignment:
Q  343 cattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttgtgaatagaataataccaaaactctcaccttctccatct 442  Q
    ||||||||||||||||| | | ||||||||||||||||| ||||  |||||| | | ||||||||| |||||||||| |||  ||||| |||||| ||||    
T  7823181 cattcacttgcttatttgtgtcctataaataggacttatgttttgatgtaaagaaacacttgtgaagagaataatacaaaagttctcatcttctctatct 7823082  T
Q  443 ttgatt 448  Q
    ||||||    
T  7823081 ttgatt 7823076  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 25214506 - 25214430
Alignment:
Q  343 cattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttgtgaatagaataatac 419  Q
    ||||||||||||||||| ||| |||||||||||||| || ||||  |||||| ||| ||||| ||| ||||||||||    
T  25214506 cattcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagatacacttgggaagagaataatac 25214430  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 25278656 - 25278580
Alignment:
Q  343 cattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttgtgaatagaataatac 419  Q
    ||||||||||||||||| ||| |||||||||||||| || ||||  |||||| ||| ||||| ||| ||||||||||    
T  25278656 cattcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagatacacttgggaagagaataatac 25278580  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 12026373 - 12026305
Alignment:
Q  336 catgcatcattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttg 404  Q
    |||| ||||||||||||||||||| ||| || |||||| |||| || ||||  |||||| |||||||||    
T  12026373 catggatcattcacttgcttatttgtatcctctaaataagactcatgttttgatgtaaagatatacttg 12026305  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 35105136 - 35105176
Alignment:
Q  364 tctataaataggacttatattttagtgtaaaaatatacttg 404  Q
    ||||||||||||||| ||||||||||||||| | |||||||    
T  35105136 tctataaataggactcatattttagtgtaaagacatacttg 35105176  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 448
Target Start/End: Original strand, 19912361 - 19912469
Alignment:
Q  341 atcattcacttgcttatttatattctataaataggacttatattttagtgtaaaa-atatacttgtgaatagaataataccaaaactctcaccttctcca 439  Q
    |||| ||||||||| |||| | | ||||||||||||| |||||| || ||||||| ||| ||||||||| |||||||||| ||| |||||| |||||| |    
T  19912361 atcactcacttgctcatttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaaagctctcatcttctcta 19912460  T
Q  440 tctttgatt 448  Q
    |||||||||    
T  19912461 tctttgatt 19912469  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 17319659 - 17319628
Alignment:
Q  198 gttggtggatgtccattcttgatcttccacat 229  Q
    ||||||||||||||||||||||||||||||||    
T  17319659 gttggtggatgtccattcttgatcttccacat 17319628  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 21294993 - 21294953
Alignment:
Q  341 atcattcacttgcttatttatattctataaataggacttat 381  Q
    |||||||||||||| |||| ||| |||||||||||||||||    
T  21294993 atcattcacttgctcatttgtatcctataaataggacttat 21294953  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 29185712 - 29185671
Alignment:
Q  196 aagttggtggatgtccattcttgatcttccacattcttataa 237  Q
    |||||||||||||||||||||||||||||||| ||| |||||    
T  29185712 aagttggtggatgtccattcttgatcttccaccttcctataa 29185671  T

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Target: scaffold0505 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 9235 - 9275
Alignment:
Q  198 gttggtggatgtccattcttgatcttccacattcttataac 238  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  9235 gttggtggatgtccattcttgatcttccaaattcttttaac 9275  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 27543807 - 27543850
Alignment:
Q  196 aagttggtggatgtccattcttgatcttccacattcttataact 239  Q
    ||||||||||||||||||| || |||||||| ||||||||||||    
T  27543807 aagttggtggatgtccattttttatcttccaaattcttataact 27543850  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 13100790 - 13100868
Alignment:
Q  341 atcattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatac-ttgtgaatagaataata 418  Q
    ||||||||||||||||||| ||| |||||||||||||| || ||||  |||||| ||| || || |||| |||||||||    
T  13100790 atcattcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagatacacattttgaagagaataata 13100868  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 27547221 - 27547262
Alignment:
Q  196 aagttggtggatgtccattcttgatcttccacattcttataa 237  Q
    ||||||||||||||||||| |||||||| || ||||||||||    
T  27547221 aagttggtggatgtccattattgatctttcaaattcttataa 27547262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 7873941 - 7873865
Alignment:
Q  343 cattcacttgcttatttatattctataaataggacttatattttagtgtaaaaatatacttgtgaatagaataatac 419  Q
    ||||||||||||||||| |||  |||||||| |||| || ||||| |||||||| | | |||| || ||||||||||    
T  7873941 cattcacttgcttatttgtatcttataaataagactcatgttttaatgtaaaaacacatttgtaaagagaataatac 7873865  T

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