View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-13 (Length: 403)
Name: NF5514-Insertion-13
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 198 - 403
Target Start/End: Complemental strand, 32139569 - 32139369
Alignment:
| Q |
198 |
tgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacaaggcaacatcatgtagtcgtgttagatacaaagaaacgtggcattggcatt |
297 |
Q |
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| T |
32139569 |
tgtcatgtttgaccaaagaaatcaatgtggtgtccagataatataaacaaggcaacatcatgtagtcgtgttagatacaaagaaacgtggcattg----- |
32139475 |
T |
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| Q |
298 |
gttaacatctcaaattgtttttgacttaaa-gcgccaacttctttaatacactatgaaccaaatcaaatgtggcaactcgatcaatataatataaataga |
396 |
Q |
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| T |
32139474 |
-ttaacatctcaaattgtttttgacttaaaagcaccaacttctttaatacactatgaaccaaatcaaatgtggcaactcgatcaatataatataaataga |
32139376 |
T |
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| Q |
397 |
cctgcct |
403 |
Q |
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| T |
32139375 |
cctgcct |
32139369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 32139754 - 32139632
Alignment:
| Q |
7 |
aagtatatttacacactgtaaaagaattccaataatatagtaagtaactcatgcctgtactgcataacaacaaagaagtacctcttcagtcttttgaaat |
106 |
Q |
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| T |
32139754 |
aagtatatttacacactgtacaagaattccaataatatattaagtaactcatgcctgcactgcataacaacaaagaagtacctcttcagtcttttgaaat |
32139655 |
T |
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| Q |
107 |
tgagagagataaaacactgcaat |
129 |
Q |
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| T |
32139654 |
tgagagagataaaacactgcaat |
32139632 |
T |
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