View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-15 (Length: 359)
Name: NF5514-Insertion-15
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 194 - 355
Target Start/End: Complemental strand, 7369398 - 7369237
Alignment:
| Q |
194 |
gagcatacgtatacgagaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacataagacgtat |
293 |
Q |
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| T |
7369398 |
gagcatacgtatacgggaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacctaagacgtgt |
7369299 |
T |
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| Q |
294 |
ctatcaatcatgtcccagcatgggttcctcctcctgcaggttgcctaaagtgctacattgac |
355 |
Q |
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| T |
7369298 |
ctatcaatcatgtcccagcatgggttcctcctcctgcaggttacctaaagtgctacattgac |
7369237 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 7369469 - 7369410
Alignment:
| Q |
151 |
ttattattttgctataaatttatgtagtatatggaagcattatgagcatacgtatacgag |
210 |
Q |
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| T |
7369469 |
ttattattttgctatgaatttatgtagtatatggaagcattatgagcatacgtatacgag |
7369410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 33564425 - 33564504
Alignment:
| Q |
8 |
gttcttggccactaccaattattccctctattgatttcattatgatttcatccttctaagtttgcattttctttgtttca |
87 |
Q |
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| T |
33564425 |
gttctcggccgctacctattattcactctattgatttcattatgaattcatctttctaagtttgcattttctttgtttca |
33564504 |
T |
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