View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514-Insertion-17 (Length: 243)

Name: NF5514-Insertion-17
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514-Insertion-17
NF5514-Insertion-17
[»] chr3 (8 HSPs)
chr3 (6-223)||(46974288-46974505)
chr3 (6-222)||(46997351-46997567)
chr3 (6-223)||(46980277-46980494)
chr3 (7-223)||(47001015-47001231)
chr3 (6-98)||(46995091-46995183)
chr3 (13-73)||(46958037-46958097)
chr3 (29-72)||(46950872-46950915)
chr3 (23-72)||(46955194-46955243)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 46974288 - 46974505
Alignment:
Q  6 cacttctaactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaaaaaacaa 105  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46974288 cacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaaaaaacaa 46974387  T
Q  106 atctgttcgatacacaaaaggagaacaaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctagatgaattttccatgct 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46974388 atctgttcgatacacaaaaggagaacgaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctagatgaattttccatgct 46974487  T
Q  206 acccatcctagatcattc 223  Q
     |||||||||||||||||    
T  46974488 gcccatcctagatcattc 46974505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 46997351 - 46997567
Alignment:
Q  6 cacttctaactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaaaaaacaa 105  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  46997351 cacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtataaggatcaaaaaacag 46997450  T
Q  106 atctgttcgatacacaaaaggagaacaaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctagatgaattttccatgct 205  Q
    |||  |||||||||||||||| ||||  |||||||||||||||||  | ||||||||||||||||||| |||| ||| ||| || ||||| |||||||||    
T  46997451 atccattcgatacacaaaaggcgaacgtaaccactcttcaaccgagtttcgcaccactttatcatcataatttgcaatagccaggtgaatcttccatgct 46997550  T
Q  206 acccatcctagatcatt 222  Q
     ||||||||||||||||    
T  46997551 gcccatcctagatcatt 46997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 46980277 - 46980494
Alignment:
Q  6 cacttctaactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaaaaaacaa 105  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||| |||||||||||||||||| ||  ||||||||||| ||||||||||| |||||    
T  46980277 cacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaaccacttatcatcacagtataaggatcaaagaacaa 46980376  T
Q  106 atctgttcgatacacaaaaggagaacaaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctagatgaattttccatgct 205  Q
    |||  ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| | ||||||||||||||||    
T  46980377 atccattcgatacaaaaaaggagaacgaaaccacttttcaaccgacctacgcaccactttatcatcgtgatttgcaatagccacatgaattttccatgct 46980476  T
Q  206 acccatcctagatcattc 223  Q
     |||||||||||||||||    
T  46980477 gcccatcctagatcattc 46980494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 47001015 - 47001231
Alignment:
Q  7 acttctaactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaaaaaacaaa 106  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||| |    
T  47001015 acttctaactgccaatgcttttcccattccaaattcattcccatacatattaaaccttggtgagctacccatcatcacagtataaggatcaaagaacaga 47001114  T
Q  107 tctgttcgatacacaaaaggagaacaaaaccactcttcaaccgacctacgcaccactttatcatcatgatttacaacagctagatgaattttccatgcta 206  Q
    ||  |||||||||||| ||||||||  | ||||||||||||  |  |  ||||||||||||||||||||||  ||| ||| |||||||| |||||||||     
T  47001115 tccattcgatacacaataggagaacgtatccactcttcaacataattttgcaccactttatcatcatgattcgcaatagccagatgaatcttccatgctg 47001214  T
Q  207 cccatcctagatcattc 223  Q
    ||||||||| |||||||    
T  47001215 cccatcctaaatcattc 47001231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 46995091 - 46995183
Alignment:
Q  6 cacttctaactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaactacccatcatcacagtgtaaggatcaa 98  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  46995091 cacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaactacccatcatcacagagtaaggatcaa 46995183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 46958037 - 46958097
Alignment:
Q  13 aactgccaaagctttgcccattccaaattcattcccatacatattaaacctcggtgaacta 73  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||| ||||| || ||||||    
T  46958037 aactgccatcgctttacccattccaaattcattcccatacatattgaaccttggcgaacta 46958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 46950872 - 46950915
Alignment:
Q  29 cccattccaaattcattcccatacatattaaacctcggtgaact 72  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  46950872 cccattccaaattcatttccatacatattaaaccttggtgaact 46950915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 46955194 - 46955243
Alignment:
Q  23 gctttgcccattccaaattcattcccatacatattaaacctcggtgaact 72  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46955194 gcttttcccattccaaattcatttccatacatattgaaccttggtgaact 46955243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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