View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514-Insertion-2 (Length: 708)

Name: NF5514-Insertion-2
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514-Insertion-2
NF5514-Insertion-2
[»] chr3 (1 HSPs)
chr3 (11-708)||(2555628-2556333)


Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 708
Target Start/End: Original strand, 2555628 - 2556333
Alignment:
Q  11 cgacctctcctctttaccatcttgatccaacaagtttttattacatgattttattcttattttgttttcatccttcaactactacgtttgttctaacctc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2555628 cgacctctcctctttaccatcttgatccaacaagtttttattacatgattttattcttattttgtttgcatccttcaactactacgtttgttctaacctc 2555727  T
Q  111 ttgcaattttcactgtttttcagttgagtaaataa------acattggttgttcatctttatttattgcagagttgttgacaagttttaggttattttcc 204  Q
    ||||||||||||| |||||||||||||||||||||      ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2555728 ttgcaattttcacagtttttcagttgagtaaataactataaacattggttgttcatctttatttattgcagaattgttgacaagttttaggttattttcc 2555827  T
Q  205 ttcatggagtatcattttcagagggatgcatgtgtttatttattggctgcagagatatggcattgaagaaacataatgctaaatagagcaggnnnnnnnn 304  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |             
T  2555828 ttcatggagtatcattttcggagggatgcatgtgtttatttattggctgcagagatacggcattgaagaaacataatgctaaatagagcggaaaaaaaaa 2555927  T
Q  305 -tcactacgtcttcacgaatttctctctctcccaaaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttg 403  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2555928 atcactacgtcttcacgaatttctctctctcccacaatctaacgtgtcttctagaaaacaaagggcaagaccattctcaccggtgatgaatccatagttg 2556027  T
Q  404 ccgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgttccactttctcaattggatagcaccacaat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2556028 ccgcttccatggttgtccttaacatcgtcgtaatggaagaaaccaccgaaataaatctccagcttcatgtttcactttctcaattggatagcaccacaat 2556127  T
Q  504 actacaaatggcaaaaatctgaaaaagtttcatttttcaggaggagatcaaacaa-cccctcaacctcattatcattgttttcatcgtagtaggtgtatt 602  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2556128 actacaaatgacaaaaatctgaaaaagtttcatttttcaggaggagatcaaacaaccccctcaacctcattatcattgttttcatcgtagtaggtgtatt 2556227  T
Q  603 ttgcaagcatgtcgatgatttcggagctcgaatgtgagttgaaggactcgatttaagcatcgttgaatcgttttcggcactgaatgagtccttaaaattg 702  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  2556228 ttggaagcatgtcgatgatttcggagctcgaatgtgagttgaaggactcgatttaagcatcgttgaatcgtttccggcactgaatgagttcttaaaattg 2556327  T
Q  703 gttagg 708  Q
    ||||||    
T  2556328 gttagg 2556333  T

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