View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5514-Insertion-21 (Length: 71)
Name: NF5514-Insertion-21
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-21 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 54306420 - 54306483
Alignment:
| Q |
8 |
gtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagc |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54306420 |
gtatcttgtaggcagtagtttttgcagtgtgaacaaggacatttaatcaagcattttgaacagc |
54306483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 54300283 - 54300317
Alignment:
| Q |
37 |
tgaacaaggacatttaatcaagcattttgaacagc |
71 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
54300283 |
tgaacaaggatatttaatcaagcattttgaacagc |
54300317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University