View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-3 (Length: 561)
Name: NF5514-Insertion-3
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Complemental strand, 27994761 - 27994346
Alignment:
| Q |
6 |
catcaaagacactcaattcatagcctctaagtttcctaaaagttctctaatttgatttcataaaattacaaaacaaataattgaagaatgcttagataaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994761 |
catcaaagacactcaattcatagcctctaagtttcctaaaagttctctaatttgatttcataaaattacaaaacaaataattgaagaatgcttagataaa |
27994662 |
T |
|
| Q |
106 |
taatggtgctat--tttctagatgtgtgccttactacccatccaaaatagctttgcatcctgatgcaacagccttgtgccctagctgcaagacgtattat |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
27994661 |
taatggtgctatattttctagatgtgtgccttactacccatccaaaatagctttgcatcctgatgcaacagctttgtgccctagctgcaagacgtattgt |
27994562 |
T |
|
| Q |
204 |
gccacagtgtgagtgccttgaggatttggcaacaaaaataacccccaaatcagatttgcaattcaaccttgcgcctctatagatacccttgcggaattga |
303 |
Q |
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| T |
27994561 |
gccacagtgtgggtgccttgaggatttggcaacaaaaataacccccaaatcagatttgcaattcaaccttgcgcctctatagatacccttgcggaattga |
27994462 |
T |
|
| Q |
304 |
gctactttgcaccatattttcaaccttcaacaattttcaaatgagattactcttcaagacaattgatcaagtcaaaagccccacttgaaccttgatcttg |
403 |
Q |
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| T |
27994461 |
gctactttgcaccatattttcaaccttcaacaattttcaaatgagattactcttcaagacaattgatcaagtcaaaacccccacttgaaccttgatcttg |
27994362 |
T |
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| Q |
404 |
aatcgacctccacttg |
419 |
Q |
| |
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| T |
27994361 |
aatcgacctccacttg |
27994346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 384 - 561
Target Start/End: Complemental strand, 27994352 - 27994175
Alignment:
| Q |
384 |
ccacttgaaccttgatcttgaatcgacctccacttgcctcaaatgacccttgctagtcctacaagtttcatccttgccttgaaatctcgtaatgccttcc |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27994352 |
ccacttgaaccttgatcttgaatcgacctccacttgcctcaaatgacccttgctggtcctacaagtttcatccttgccttgaaacctcgtaatgccttcc |
27994253 |
T |
|
| Q |
484 |
gctctcttgaagattttttgcccaactacctaagactttttagatagcttcaaaagtttcaccataacctttttagcc |
561 |
Q |
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| T |
27994252 |
gctctcttgaagattttttgcccaactacctaagactttttagatagcttcaaaagtttcaccataacctttttagcc |
27994175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 10379483 - 10379537
Alignment:
| Q |
499 |
ttttgcccaactacctaagactttttagatagcttcaaaagtttcaccataacct |
553 |
Q |
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| T |
10379483 |
ttttgcccaactaccttaagcattttagatagcttcaaaagttccaccataacct |
10379537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 26221604 - 26221670
Alignment:
| Q |
9 |
caaagacactcaattcatagcctctaagtttcctaaaagttctctaatttgatttcataaaattaca |
75 |
Q |
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| T |
26221604 |
caaagacacgcaattcttagcctctaagttttctaaaagctctcttatttggtttgataagattaca |
26221670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 4075696 - 4075737
Alignment:
| Q |
9 |
caaagacactcaattcatagcctctaagtttcctaaaagttc |
50 |
Q |
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| T |
4075696 |
caaaggcactcaactcttagcctctaagtttcctaaaagttc |
4075737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 548
Target Start/End: Original strand, 39570031 - 39570091
Alignment:
| Q |
488 |
tcttgaagattttttgcccaactacctaagactttttagatagcttcaaaagtttcaccat |
548 |
Q |
| |
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|||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||||||| |
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| T |
39570031 |
tcttaaagattttatgcccaattaccttagactttttaggcagctttacaagtttcaccat |
39570091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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