View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5514-Insertion-4 (Length: 537)
Name: NF5514-Insertion-4
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-4 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 71 - 537
Target Start/End: Complemental strand, 4867980 - 4867511
Alignment:
| Q |
71 |
tgcagatcaaatgagaaggagaataaaatctaatttcaaatataatcacaaacagatccaaatccgcaataacataatttagcaaaagcgacccttgctg |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
4867980 |
tgcagatcaaatgagaaggagaataaaatctaatttcaaatataatcacaaacagatccaaatccgcaattatataatttagcaaaagcgacccttgctg |
4867881 |
T |
|
| Q |
171 |
gcaatgtttcataaattatttgaaaaccataatcaacagaaaacgaagaaaaacatatataaaac---taattgataaagtctcttaaagtttttcccaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4867880 |
gcaatgtttcataaattatttgaaaaccataatcaacagaaaacgaagaaaaacatatataaaacaactaattgataaagtctcttaaagtttttcccaa |
4867781 |
T |
|
| Q |
268 |
ttatttatgttaccatttccaaatccaacatgcagcacgactttgaactatcatcatgtaaataacttgcttctacactggtgagcttaaaagcctgtcc |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4867780 |
ttatttatgttaccatttccaaatccaacatgcagcacaactttgaactatcatcatgtaaataacttgcttctacattggtgagcttaaaagcctgtcc |
4867681 |
T |
|
| Q |
368 |
ttgctgttgagtttggtgagcttatggttgctggtacatcgacatggtaggaatgggttggataatattattgtagatttcaggccgttggcaaaaaaga |
467 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4867680 |
tcactgttgagtttggtgagcttatggttgctggtacatcgacatggtaggaatgggttggataatcttattgtagatttcaggccgttggcaaaaaaga |
4867581 |
T |
|
| Q |
468 |
ttattctcattgacacctaagaactcagattaaggcccttgagtggtcgcattggttggagtcccaaaag |
537 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4867580 |
ttattctcattgacacctaaggactcagatgaaggcccgtgagtggtcgcattggttggagttccaaaag |
4867511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 71 - 529
Target Start/End: Complemental strand, 7159831 - 7159374
Alignment:
| Q |
71 |
tgcagatcaaatgagaaggagaataaaatctaatttcaaatataatcacaaacagatccaaatccgcaataacataatttagcaaaagcgacccttgctg |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||| ||| || ||||||| |||||||||| ||| | |||||| |||||| ||| |
|
|
| T |
7159831 |
tgcagatcaaatgagaaggataataaaatataatttcaaatatagtcataaaaggaaccaaatctgcaataacatcattaaccaaaagtgaccctcgcta |
7159732 |
T |
|
| Q |
171 |
gcaatgtttcataaattatttgaaaaccataatcaacagaaaacgaagaaaaacatatataaaactaattgataaagtctcttaaagtttttcccaatta |
270 |
Q |
| |
|
||||| ||| | ||||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||| || |||||||||| ||| ||||| |
|
|
| T |
7159731 |
gcaatatttaagaaattatttgaaaaccataatcaacagaaaaacaa-agaaacgcatataaaactaattgataaactcgcttaaagtttgtccaaatta |
7159633 |
T |
|
| Q |
271 |
tttatgttaccatttccaaatccaacatgcagcacgactttgaactatcatcatgtaaataacttgcttctacactggtgagcttaaaagcctgtccttg |
370 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||||| |||||||| |||| ||||| |
|
|
| T |
7159632 |
tttatgttgacattcccaaatccaacatgcagcacaactttgaacaatcatcatgtaaataacctgcttctgcactggcgagcttaacagcccgtcctca |
7159533 |
T |
|
| Q |
371 |
ctgttgagtttggtgagcttatggttgctggtacatcgacatggtaggaatgggttggataatattattgtagatttcaggccgttggcaaaaaagatta |
470 |
Q |
| |
|
|| |||||||||||||| || | ||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || ||||| |||| ||||| |
|
|
| T |
7159532 |
ctactgagtttggtgagcccatagctgctggtacatcgacatagtaggaatgggttggatagtattattgtatattgcagtcccttggctaaaaggatta |
7159433 |
T |
|
| Q |
471 |
ttctcattgacacctaagaactcagattaaggcccttgagtggtcgcattggttggagt |
529 |
Q |
| |
|
|| || ||| |||||||| ||| |||| || |||||||||||||| ||| |||| |||| |
|
|
| T |
7159432 |
ttttctttgtcacctaaggactgagatgaatgcccttgagtggtcacatcggtttgagt |
7159374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 14416468 - 14416609
Alignment:
| Q |
287 |
caaatccaacatgcagcacga-ctttgaactatcatcatgtaaataacttgcttctacactggtgagcttaaaagcctgtccttgctgttgagtttggtg |
385 |
Q |
| |
|
||||| |||| |||||| ||| |||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| | || |||||| |||||| | |
|
|
| T |
14416468 |
caaattcaacctgcagcccgaactttgaacaatcctcatgcaaataacctgcttctacaccggtgagcctaaaagctcattctcactgttgggtttggcg |
14416567 |
T |
|
| Q |
386 |
agcttatggttgctggtacatcgacatggtaggaatgggttg |
427 |
Q |
| |
|
||| ||| ||| ||||||||||||| |||||||| ||||| |
|
|
| T |
14416568 |
agccaatgtttgttggtacatcgacaaagtaggaatcggttg |
14416609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University