View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514-Insertion-5 (Length: 530)
Name: NF5514-Insertion-5
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 31760864 - 31761097
Alignment:
| Q |
8 |
attatttcgtgtaggcttatatatttgagttgaagaaaaaagtcaagagcttggaagaagagaatgccagacttaaaagacagcaacatgtttgttttct |
107 |
Q |
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| T |
31760864 |
attatttcgtgtaggcttatatatttgagttgaagaaaaaagtcaagagcttggaagaagagaatgccagacttaaaagacagcaacatgtttgttttct |
31760963 |
T |
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| Q |
108 |
cctctctccttgttactagtaattctttatctttacagcacacactacacaatgtatgtactctgtttcaaccacttctactattatttatatttgatcn |
207 |
Q |
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| T |
31760964 |
cctctctccttgttactagtaattctttatctttacagcacacactacacaatgtatgtactctgtttcaaccacttctactattatttatattttaact |
31761063 |
T |
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| Q |
208 |
nnnnnnatgtatatggttggttggtactagtgtg |
241 |
Q |
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| T |
31761064 |
ttttttaagtatatggttggttggtactagtgtg |
31761097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 307 - 530
Target Start/End: Original strand, 31761163 - 31761395
Alignment:
| Q |
307 |
tatacgttcgtataaaagtgaattgaacgataaatttatgggtaaaattcatgttttgacgaaaaactacaaatcctaaatttaagttagaattagttta |
406 |
Q |
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| T |
31761163 |
tatacgttcatataaaagtgaattgaacgataaatttatgggtaaaattcatgttttgaggaaaaactacaaatcctaaatttaagttagaattagttta |
31761262 |
T |
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| Q |
407 |
gatgtaaa-gtcattgtaattgaaaacacccaaccataccaaaatcaattttatagcttctaatcaatttcaaa--------tctccagtcccaaatgta |
497 |
Q |
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| T |
31761263 |
gatgtaaacgtcattgcaattgaaaacacccaaccataccaaaatcaattttaaagcttctaatcaatttcaaaatttcaattctccagtcccaaatgta |
31761362 |
T |
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| Q |
498 |
acccaatcatgcactagttgtgtttaactatca |
530 |
Q |
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| T |
31761363 |
acccaatcatgcactagttgtgtttaactatca |
31761395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 7280575 - 7280539
Alignment:
| Q |
317 |
tataaaagtgaattgaacgataaatttatgggtaaaa |
353 |
Q |
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| T |
7280575 |
tataaaagtgaattgaacgataaatttgtgtgtaaaa |
7280539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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