View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514-Insertion-7 (Length: 516)

Name: NF5514-Insertion-7
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514-Insertion-7
NF5514-Insertion-7
[»] chr4 (1 HSPs)
chr4 (8-516)||(54012113-54012614)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 516
Target Start/End: Complemental strand, 54012614 - 54012113
Alignment:
Q  8 gcttcttcatttgcatacactacaagactcttcttcatcccatgtttgccggtaacctttttagttgtgatggcaatgtggctttggtccaaaacatttt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54012614 gcttcttcatttgcatacactacaagactcttcttcatcccatgtttgccagtaacctttttagttgtgatggcaatgtggctttggtccaaaacatttt 54012515  T
Q  108 tacttagtttctattacctccgaggtagactccaccaaacctgggttgtaccgcgatgtggctttcaggtcggtcatctattctaaaagtttctctttaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54012514 tacttagtttctattacctccgaggtagactccaccaaacctgggttgtaccgcgatgtggctttcaggtcggtcatctattctaaaagtttctctctaa 54012415  T
Q  208 gtttaacggtctctacaattgcagcacctgatgaaagtattgannnnnnnnnnnnnnnnnncaatattgttaacagtatttcttgccatttgctactgat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||    
T  54012414 gtttaacggtctctacaattgcagcacctgatgaaagtattgatttttttcttttctttttcaatattgttaacagtatttcttgccatttgctactgat 54012315  T
Q  308 ggaattaacaagcaaattgagcaagcaatcctcagggctgataaaatgggtgttaaagtcattagcctagctgcattgaacaaggtttgtcatgttattg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54012314 ggaattaacaagcaaattgagcaagcaatcctcagggctgataaaatgggtgttaaagtcattagcctagctgcattgaacaaggtttgtcatattattg 54012215  T
Q  408 aatttcttcttttatttttttgctatttnnnnnnnnnnnnnnnnnnnngtgataaattgaaatctggcattctcttacaaagttgttgaagatttcaaag 507  Q
    ||||||||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54012214 aatttcttcttttatttttttgctattt------aaaaaaaaaaaaacgtgataaattgaaatctggcattctcttacaaagttgttgaaga-ttcaaag 54012122  T
Q  508 ccttgttga 516  Q
    |||||||||    
T  54012121 ccttgttga 54012113  T

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