View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514-Insertion-8 (Length: 315)

Name: NF5514-Insertion-8
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514-Insertion-8
NF5514-Insertion-8
[»] chr8 (27 HSPs)
chr8 (118-315)||(38296684-38296881)
chr8 (13-84)||(30999662-30999733)
chr8 (13-84)||(43275538-43275609)
chr8 (8-84)||(2540065-2540143)
chr8 (13-84)||(40918870-40918941)
chr8 (13-84)||(11174362-11174435)
chr8 (13-84)||(40058442-40058515)
chr8 (16-84)||(3585516-3585586)
chr8 (16-84)||(11646467-11646537)
chr8 (13-84)||(7146978-7147051)
chr8 (13-84)||(37345636-37345709)
chr8 (16-84)||(36068145-36068215)
chr8 (13-84)||(20546428-20546499)
chr8 (14-84)||(13881094-13881167)
chr8 (13-83)||(27035063-27035134)
chr8 (14-84)||(28326797-28326866)
chr8 (13-54)||(37510363-37510404)
chr8 (84-124)||(45278717-45278757)
chr8 (84-123)||(27034995-27035034)
chr8 (14-60)||(35866705-35866751)
chr8 (85-123)||(36068078-36068116)
chr8 (84-122)||(43275637-43275675)
chr8 (84-121)||(3585451-3585488)
chr8 (88-121)||(7146913-7146946)
chr8 (84-121)||(8697914-8697951)
chr8 (84-121)||(40918969-40919006)
chr8 (84-121)||(41307977-41308014)
[»] chr6 (19 HSPs)
chr6 (13-84)||(7761366-7761437)
chr6 (13-84)||(1605644-1605717)
chr6 (13-84)||(8626547-8626620)
chr6 (13-84)||(29260257-29260330)
chr6 (13-84)||(30734622-30734695)
chr6 (13-84)||(13757273-13757346)
chr6 (13-84)||(4129492-4129565)
chr6 (17-84)||(31559879-31559948)
chr6 (8-82)||(8235691-8235767)
chr6 (13-83)||(17942511-17942583)
chr6 (36-84)||(30734772-30734820)
chr6 (13-84)||(15064833-15064906)
chr6 (14-84)||(14287054-14287125)
chr6 (14-84)||(21277574-21277645)
chr6 (38-84)||(33845449-33845495)
chr6 (84-121)||(1605579-1605616)
chr6 (84-121)||(7761301-7761338)
chr6 (84-121)||(29260192-29260229)
chr6 (14-54)||(30235447-30235487)
[»] chr2 (18 HSPs)
chr2 (13-84)||(1646354-1646425)
chr2 (13-84)||(39938235-39938308)
chr2 (13-84)||(1102568-1102641)
chr2 (13-84)||(3518973-3519046)
chr2 (13-84)||(23366854-23366927)
chr2 (24-84)||(37673887-37673949)
chr2 (13-72)||(22388274-22388335)
chr2 (13-84)||(12969878-12969951)
chr2 (19-84)||(34242042-34242107)
chr2 (14-74)||(4917839-4917899)
chr2 (89-121)||(34222058-34222090)
chr2 (24-84)||(39562037-39562097)
chr2 (14-84)||(14779844-14779914)
chr2 (84-121)||(1102503-1102540)
chr2 (84-121)||(3518908-3518945)
chr2 (84-121)||(12969979-12970016)
chr2 (84-121)||(34224394-34224431)
chr2 (84-120)||(23366790-23366826)
[»] chr1 (31 HSPs)
chr1 (13-84)||(47037991-47038062)
chr1 (13-84)||(23045418-23045491)
chr1 (13-84)||(40783796-40783869)
chr1 (7-84)||(321691-321770)
chr1 (16-84)||(284398-284468)
chr1 (13-84)||(23526305-23526378)
chr1 (7-84)||(27211097-27211176)
chr1 (8-84)||(46771702-46771780)
chr1 (13-84)||(52037261-52037332)
chr1 (13-84)||(24772044-24772117)
chr1 (13-84)||(33082810-33082883)
chr1 (23-84)||(1837978-1838039)
chr1 (13-84)||(1749372-1749445)
chr1 (14-84)||(52478033-52478103)
chr1 (17-84)||(7765078-7765147)
chr1 (84-124)||(284330-284370)
chr1 (84-124)||(23045519-23045559)
chr1 (14-81)||(24876633-24876699)
chr1 (14-78)||(31003926-31003992)
chr1 (14-77)||(34458863-34458926)
chr1 (26-84)||(40562733-40562792)
chr1 (84-123)||(41959076-41959115)
chr1 (14-81)||(31061594-31061662)
chr1 (84-121)||(3943060-3943097)
chr1 (84-121)||(9588670-9588707)
chr1 (84-121)||(13985007-13985044)
chr1 (14-84)||(18396760-18396832)
chr1 (84-121)||(44227848-44227885)
chr1 (84-121)||(47038090-47038127)
chr1 (14-54)||(27143151-27143191)
chr1 (84-120)||(27211204-27211240)
[»] chr7 (22 HSPs)
chr7 (8-84)||(47110516-47110592)
chr7 (13-84)||(25614492-25614563)
chr7 (13-84)||(10981573-10981646)
chr7 (13-84)||(27813876-27813949)
chr7 (13-84)||(40349025-40349098)
chr7 (13-84)||(36453263-36453336)
chr7 (22-84)||(16360449-16360511)
chr7 (14-84)||(16662161-16662231)
chr7 (14-84)||(17636521-17636591)
chr7 (19-84)||(7743542-7743608)
chr7 (19-84)||(3091582-3091649)
chr7 (7-84)||(27942172-27942251)
chr7 (84-123)||(25614591-25614630)
chr7 (25-83)||(27021566-27021624)
chr7 (84-121)||(40348960-40348997)
chr7 (14-84)||(37983221-37983289)
chr7 (121-175)||(43002341-43002396)
chr7 (13-84)||(3498893-3498966)
chr7 (84-121)||(10981508-10981545)
chr7 (84-121)||(25060149-25060186)
chr7 (84-121)||(27813811-27813848)
chr7 (23-60)||(28200298-28200335)
[»] chr3 (23 HSPs)
chr3 (13-84)||(36881347-36881418)
chr3 (13-84)||(198920-198993)
chr3 (13-84)||(13364908-13364981)
chr3 (13-84)||(23088070-23088143)
chr3 (13-84)||(46694249-46694322)
chr3 (16-84)||(19241810-19241880)
chr3 (13-84)||(3383141-3383214)
chr3 (13-84)||(43750202-43750275)
chr3 (17-84)||(29375203-29375272)
chr3 (14-84)||(19897067-19897139)
chr3 (13-58)||(27707127-27707172)
chr3 (84-124)||(198852-198892)
chr3 (19-84)||(37781002-37781069)
chr3 (84-128)||(38805238-38805282)
chr3 (14-60)||(18356007-18356053)
chr3 (84-122)||(36881281-36881319)
chr3 (84-121)||(3383076-3383113)
chr3 (19-60)||(6901655-6901696)
chr3 (84-121)||(12094582-12094619)
chr3 (30-84)||(13702834-13702890)
chr3 (84-121)||(29375138-29375175)
chr3 (23-84)||(44522506-44522567)
chr3 (84-124)||(46694350-46694390)
[»] chr4 (32 HSPs)
chr4 (7-84)||(25704716-25704795)
chr4 (13-84)||(12071626-12071699)
chr4 (13-84)||(24706386-24706459)
chr4 (13-84)||(34324721-34324794)
chr4 (17-84)||(21310490-21310559)
chr4 (13-84)||(22321406-22321479)
chr4 (13-84)||(40122624-40122697)
chr4 (13-84)||(44568902-44568975)
chr4 (13-84)||(50767929-50768002)
chr4 (13-84)||(14261109-14261182)
chr4 (13-84)||(21661674-21661747)
chr4 (13-84)||(21670438-21670511)
chr4 (13-84)||(20249152-20249224)
chr4 (7-77)||(21064834-21064904)
chr4 (14-83)||(32543547-32543617)
chr4 (14-84)||(20714488-20714560)
chr4 (13-84)||(31892303-31892372)
chr4 (84-121)||(22321507-22321544)
chr4 (19-84)||(6129093-6129160)
chr4 (36-84)||(1988100-1988150)
chr4 (14-60)||(19692814-19692860)
chr4 (14-60)||(19703399-19703445)
chr4 (84-121)||(12071561-12071598)
chr4 (84-121)||(14261044-14261081)
chr4 (84-121)||(21310425-21310462)
chr4 (84-121)||(24706487-24706524)
chr4 (84-121)||(25704651-25704688)
chr4 (22-59)||(26676714-26676751)
chr4 (84-121)||(34324823-34324860)
chr4 (84-121)||(40122725-40122762)
chr4 (88-121)||(44568837-44568870)
chr4 (14-83)||(51777687-51777755)
[»] scaffold1431 (1 HSPs)
scaffold1431 (13-84)||(38-111)
[»] chr5 (21 HSPs)
chr5 (13-84)||(10285196-10285269)
chr5 (13-84)||(12806992-12807065)
chr5 (13-84)||(25773714-25773787)
chr5 (13-84)||(40886749-40886822)
chr5 (13-84)||(30720631-30720704)
chr5 (13-84)||(36561238-36561311)
chr5 (8-84)||(37900758-37900836)
chr5 (13-84)||(7277561-7277634)
chr5 (13-84)||(25683367-25683440)
chr5 (14-84)||(30403101-30403174)
chr5 (26-84)||(23098386-23098446)
chr5 (14-84)||(734478-734549)
chr5 (14-84)||(16054179-16054249)
chr5 (14-60)||(39070974-39071020)
chr5 (14-54)||(11319656-11319696)
chr5 (84-124)||(30720732-30720772)
chr5 (14-84)||(1056422-1056493)
chr5 (84-126)||(15305228-15305270)
chr5 (84-121)||(12807093-12807130)
chr5 (84-121)||(15304822-15304859)
chr5 (84-121)||(25773649-25773686)
[»] scaffold0062 (1 HSPs)
scaffold0062 (13-84)||(404-475)
[»] scaffold1770 (1 HSPs)
scaffold1770 (13-84)||(227-300)
[»] scaffold0054 (1 HSPs)
scaffold0054 (13-84)||(45519-45592)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-83)||(65302-65375)
[»] scaffold0056 (1 HSPs)
scaffold0056 (14-84)||(70889-70961)
[»] scaffold0257 (2 HSPs)
scaffold0257 (84-121)||(23467-23504)
scaffold0257 (84-124)||(23876-23916)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 118 - 315
Target Start/End: Original strand, 38296684 - 38296881
Alignment:
Q  118 agtaatactttaccttccccattcctaataaaatggaaataatagaataccaaagaaataaaaacaggccatcacagagaagtctgtcnnnnnnnggcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  38296684 agtaatactttaccttccccattcctaataaaatggaaataatagaataccaaagaaataaaaacaggccatcacagagaagtctgtcaaaaaaaggcag 38296783  T
Q  218 cactacaagtagttaaaagccatgacaacaacacaccctattgtgcaaacagctccaaaactccctaaataacacaaaaactccaaagctcagccaac 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38296784 cactacaagtagttaaaagccatgacagcaacacaccctattgcgcaaacagctccaaaactccctaaattacacaaaaactccaaagctcagccaac 38296881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30999662 - 30999733
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999662 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 30999733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 43275538 - 43275609
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275538 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 43275609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 2540065 - 2540143
Alignment:
Q  8 aaaacaaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  2540065 aaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 2540143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40918870 - 40918941
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  40918870 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatgttttcataaaaaataacaaaat 40918941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 11174362 - 11174435
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  11174362 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 11174435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40058442 - 40058515
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40058442 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 40058515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 3585586 - 3585516
Alignment:
Q  16 taaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3585586 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 3585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 11646467 - 11646537
Alignment:
Q  16 taaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  11646467 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 11646537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7147051 - 7146978
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  7147051 aaataaaatgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaat 7146978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 37345709 - 37345636
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  37345709 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaat 37345636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 36068215 - 36068145
Alignment:
Q  16 taaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    |||||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  36068215 taaaatgaaataattaatgattaagggtattatagaaaacacacatatattttcattaaaaataacaaaat 36068145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 20546428 - 20546499
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||  |||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  20546428 aaatataatgaaataataaattgttaagggtatcatataaaacacacataatttcatcaaaaataacaaaat 20546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 13881094 - 13881167
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||||||||||||||||||||||||||||||   ||||| |||| | |||||||||||||||||||||    
T  13881094 aatataatgaaataataaatgattaagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaat 13881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 27035134 - 27035063
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaa 83  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||| ||||    
T  27035134 aaatagaatgaaataataaatggttaagggtattatagaaacacagacataatttcatcaaaaataaaaaaa 27035063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 28326797 - 28326866
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||  ||||| ||||||| ||||| ||||||| |||||||||||||||||||||    
T  28326797 aatagaatgaaataataaatagttaagagtattattgaaaa-acacataatttcatcaaaaataacaaaat 28326866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 37510404 - 37510363
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaa 54  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  37510404 aaataaaatgaaatattaaatgattaagggtattattgaaaa 37510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 45278717 - 45278757
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  45278717 tctccaaaatggacatgtattttgaaacggagggagtaata 45278757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 27035034 - 27034995
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaat 123  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  27035034 tctccaaaatggacatgtattttgaaacggagggagtaat 27034995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 35866751 - 35866705
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    |||| ||| |||||||||||| ||||||||||||||||||| |||||    
T  35866751 aatagaataaaataataaatgtttaagggtattatagaaaaaacaca 35866705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 36068116 - 36068078
Alignment:
Q  85 ctccaaaatggacatgtattttaaaacggaaggagtaat 123  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  36068116 ctccaaaatggacatgtattttgaaacggagggagtaat 36068078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 43275637 - 43275675
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaa 122  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  43275637 tctccaaaatggacatgtattttgaaacggagggagtaa 43275675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 3585488 - 3585451
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  3585488 tctccaaaatggacatgtattttgaaacggagggagta 3585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 7146946 - 7146913
Alignment:
Q  88 caaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||| ||||||||||||||    
T  7146946 caaaatggacatgtattttgaaacggaaggagta 7146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 8697914 - 8697951
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  8697914 tctccaaaatggacatgtattttgaaacggagggagta 8697951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 40918969 - 40919006
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  40918969 tctccaaaatggacatgtattttgaaacggagggagta 40919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 41307977 - 41308014
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  41307977 tctccaaaatggacatgtattttgaaacggagggagta 41308014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7761437 - 7761366
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7761437 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 7761366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 1605717 - 1605644
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  1605717 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 1605644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 8626620 - 8626547
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8626620 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 8626547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 29260330 - 29260257
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29260330 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 29260257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30734622 - 30734695
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  30734622 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 30734695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 13757346 - 13757273
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13757346 aaataaaatgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 13757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 4129565 - 4129492
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  4129565 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaat 4129492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 31559879 - 31559948
Alignment:
Q  17 aaaatgaaataataaatgattaagggtattatagaaaac--acacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  31559879 aaaatgaaataataaatgattaagggtattacagaaaacatacacatattttcatcaaaaataacaaaat 31559948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8235767 - 8235691
Alignment:
Q  8 aaaacaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaa 82  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||||    
T  8235767 aaaaaaaatagaatgaaataataaatgattaagggtattatagaaaacacacacataatatcataaaaaataacaaa 8235691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 17942583 - 17942511
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaa 83  Q
    |||||||||||||||||||||| |||||||||||||||| ||||  |||||| ||||||||||||||| ||||    
T  17942583 aaataaaatgaaataataaatggttaagggtattatagagaacacgcacataatttcatcaaaaataaaaaaa 17942511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 30734772 - 30734820
Alignment:
Q  36 ttaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30734772 ttaagggtattatagaaaacacacataatttcatcaaaaataacaaaat 30734820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 15064833 - 15064906
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||| |||| |||  ||||||||| |||||||||||||||||||||    
T  15064833 aaatataatcaaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaat 15064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 14287125 - 14287054
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaaca-cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||| |  |||||||||||||||||| | |||| | |||||| ||||||||||||||    
T  14287125 aataaaatgaaataataaaggggtaagggtattatagaaaaaagcacagaatttcataaaaaataacaaaat 14287054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 21277574 - 21277645
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||| || ||||| |||||||||||||||| |||||||| | |||||||| ||||||||||||||    
T  21277574 aatagaatgaagtactaaataattaagggtattatagaaaaacacataaattttcataaaaaataacaaaat 21277645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 33845449 - 33845495
Alignment:
Q  38 aagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  33845449 aagggtactatagaaaaaatacataatttcatcaaaaataacaaaat 33845495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 1605616 - 1605579
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  1605616 tctccaaaatggacatgtattttgaaacggagggagta 1605579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 7761338 - 7761301
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  7761338 tctccaaaatggacatgtattttgaaacggagggagta 7761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 29260229 - 29260192
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  29260229 tctccaaaatggacatgtattttgaaacggagggagta 29260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 30235447 - 30235487
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa 54  Q
    |||| |||||||||||||||||||||| ||| |||||||||    
T  30235447 aatagaatgaaataataaatgattaagagtaatatagaaaa 30235487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 1646425 - 1646354
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1646425 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 1646354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 39938308 - 39938235
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  39938308 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 39938235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 1102641 - 1102568
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  1102641 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 1102568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 3519046 - 3518973
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  3519046 aaataaaatgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 3518973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 23366927 - 23366854
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  23366927 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaat 23366854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 37673887 - 37673949
Alignment:
Q  24 aataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 37673949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 22388274 - 22388335
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22388274 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaa 22388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 12969878 - 12969951
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||||||||||||  | ||||||| |||||||||||||||||||||    
T  12969878 aaatagaataaaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaat 12969951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 34242107 - 34242042
Alignment:
Q  19 aatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||  ||||||| ||| | |||| ||||| | |||||||||||||||||||||    
T  34242107 aatgaaataataaatgggtaagggtgttacaaaaaaaacacagaatttcatcaaaaataacaaaat 34242042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 4917899 - 4917839
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaa 74  Q
    |||| ||||||||||||||| ||||||  |||||||||||| ||||||| ||| |||||||    
T  4917899 aatagaatgaaataataaataattaagattattatagaaaaaacacataattttatcaaaa 4917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 34222090 - 34222058
Alignment:
Q  89 aaaatggacatgtattttaaaacggaaggagta 121  Q
    |||||||||||||||||||||||||||||||||    
T  34222090 aaaatggacatgtattttaaaacggaaggagta 34222058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 39562037 - 39562097
Alignment:
Q  24 aataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||| |||||||||||| | |||||| | ||| |||| ||||||||||||||||    
T  39562037 aataataaatggttaagggtattagaaaaaacaaaaataatttcttcaaaaataacaaaat 39562097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 14779914 - 14779844
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    |||| ||||||||||||||||| ||||  |||||||||||| ||||| ||  ||||||||||||||| |||||    
T  14779914 aatataatgaaataataaatgagtaag--tattatagaaaaaacacaaataatttcatcaaaaataaaaaaat 14779844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 1102540 - 1102503
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  1102540 tctccaaaatggacatgtattttgaaacggagggagta 1102503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 3518945 - 3518908
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  3518945 tctccaaaatggacatgtattttgaaacggagggagta 3518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 12969979 - 12970016
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  12969979 tctccaaaatggacatgtattttgaaacggagggagta 12970016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 34224394 - 34224431
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34224394 tctccaaaatggacatgtattttgaaacggagggagta 34224431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 23366826 - 23366790
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagt 120  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  23366826 tctccaaaatggacatgtattttgaaacggagggagt 23366790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 47037991 - 47038062
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47037991 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 47038062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 23045418 - 23045491
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23045418 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 23045491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40783796 - 40783869
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40783796 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 40783869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 321770 - 321691
Alignment:
Q  7 aaaaacaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  321770 aaaaaaaaataaaatgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaat 321691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 284468 - 284398
Alignment:
Q  16 taaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  284468 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 284398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 23526378 - 23526305
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  23526378 aaatagaatgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaat 23526305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 27211097 - 27211176
Alignment:
Q  7 aaaaacaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    ||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  27211097 aaaaaaaaatagaataaaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaat 27211176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 46771780 - 46771702
Alignment:
Q  8 aaaacaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||| ||||||| |||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  46771780 aaaaaaaatagaatgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaat 46771702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 52037261 - 52037332
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||    
T  52037261 aaatagaatgaaataataaatggttaagagtattatagaaaacacacataattttatcaaaaataataaaat 52037332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 24772044 - 24772117
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  24772044 aaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaat 24772117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 33082883 - 33082810
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  33082883 aaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaat 33082810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 1837978 - 1838039
Alignment:
Q  23 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  1837978 aaataataaatgggtaagggtattatagaaaaaacacataatttcatcaaaaataacaaaat 1838039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 1749445 - 1749372
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| |||| | |||||||||||||||||||||  |||||||||||||||||||||    
T  1749445 aaatagaataaaataataaatggttaatgctattatagaaaacacacatataatttcatcaaaaataacaaaat 1749372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 52478103 - 52478033
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||| ||||||  |||||| |||||||||||| ||||| | |||||||||||||||||||||    
T  52478103 aatagaatgaaatgataaatttttaaggttattatagaaaaaacacaaaatttcatcaaaaataacaaaat 52478033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 7765147 - 7765078
Alignment:
Q  17 aaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||| ||| ||||||||  ||||||||||||||  ||||| |||||||||||||||    
T  7765147 aaaattaaataataaatggttatgggtattacggaaaacacacatataatttcaccaaaaataacaaaat 7765078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 284370 - 284330
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  284370 tctccaaaatggacatgtattttgaaacggagggagtaata 284330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 23045519 - 23045559
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  23045519 tctccaaaatggacatgtattttgaaacggagggagtaata 23045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 24876699 - 24876633
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaa 81  Q
    |||| |||||||| ||||||| | || |||||||||||||| ||||||| | ||||||||||||||||    
T  24876699 aatagaatgaaatgataaatggtcaaaggtattatagaaaa-acacataatatcatcaaaaataacaa 24876633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 31003926 - 31003992
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataa 78  Q
    |||| ||| |||||||||||| |||||||||||||||  |||| ||||||| |||||| ||||||||    
T  31003926 aatagaattaaataataaatggttaagggtattatagaaaaaatacacatactttcattaaaaataa 31003992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 34458863 - 34458926
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaata 77  Q
    |||| ||||||||||||||| | ||||| |||||||||||| ||||| | |||||| |||||||    
T  34458863 aatagaatgaaataataaattagtaaggttattatagaaaaaacacagaatttcataaaaaata 34458926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 40562733 - 40562792
Alignment:
Q  26 taataaatgattaagggtattatagaaaacacacatat-tttcatcaaaaataacaaaat 84  Q
    ||||||||| |||| |||||||||||||||||| ||||  || |||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacacatatataatttatcaaaaataacaaaat 40562792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 41959115 - 41959076
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaat 123  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  41959115 tctccaaaatggacatgtattttgaaacggagggagtaat 41959076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 31061594 - 31061662
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaa 81  Q
    |||| |||||||||||||||| ||| ||||||||| |||||  |||||||| |||||| |||||||||||    
T  31061594 aatataatgaaataataaatggtta-gggtattatggaaaaaacacacataatttcataaaaaataacaa 31061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 3943097 - 3943060
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  3943097 tctccaaaatggacatgtattttgaaacggagggagta 3943060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 9588707 - 9588670
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  9588707 tctccaaaatggacatgtattttgaaacggagggagta 9588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 13985007 - 13985044
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  13985007 tctccaaaatggacatgtattttgaaacggatggagta 13985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 18396832 - 18396760
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||||||||| |||| ||||   ||||||||||||  |||||||| |||||| ||||||||||||||    
T  18396832 aatagaatgaaataatgaatggttaaatatattatagaaaaaccacacataatttcataaaaaataacaaaat 18396760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 44227885 - 44227848
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  44227885 tctccaaaatggacatgtattttgaaacggagggagta 44227848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 47038090 - 47038127
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  47038090 tctccaaaatggacatgtattttgaaacggatggagta 47038127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 27143151 - 27143191
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa 54  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  27143151 aatagaatgaaataataaatgattaagaatattatagaaaa 27143191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 27211204 - 27211240
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagt 120  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  27211204 tctccaaaatggacatgtattttgaaacggagggagt 27211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 47110592 - 47110516
Alignment:
Q  8 aaaacaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47110592 aaaaaaaataaaataaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 47110516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25614492 - 25614563
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25614492 aaataaaatgaaataataaatgattaagggtatttcagaaaacacacatattttcatcaaaaataacaaaat 25614563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 10981646 - 10981573
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10981646 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 10981573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 27813949 - 27813876
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  27813949 aaataaaatgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaat 27813876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 40349098 - 40349025
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40349098 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 40349025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 36453263 - 36453336
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  36453263 aaataaaatgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaat 36453336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 16360511 - 16360449
Alignment:
Q  22 gaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  16360511 gaaataataaatggttaagggtattatagaaaaaacacagaatttcatcaaaaataacaaaat 16360449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 16662231 - 16662161
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||| |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  16662231 aatataataaaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaat 16662161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 17636591 - 17636521
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||| |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  17636591 aatataataaaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaat 17636521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 7743542 - 7743608
Alignment:
Q  19 aatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||| |||||||||||||||||||||    
T  7743542 aatgaaataataaataattaacggtattatagaaagaaacacataatttcatcaaaaataacaaaat 7743608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 3091649 - 3091582
Alignment:
Q  19 aatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||| |||||||||||||||  |||||||| | | |||||||||||||||||||||    
T  3091649 aatgaaataataaatggttaagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaat 3091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 27942172 - 27942251
Alignment:
Q  7 aaaaacaaataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||||| |||||||||||||||| |||| ||||||||||  |||||||||||| | |||| |||||||| |||||    
T  27942172 aaaaaaaaatagaatgaaataataaatggttaaaggtattatagaaaaaacacacataatctcattaaaaataaaaaaat 27942251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 25614591 - 25614630
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaat 123  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  25614591 tctccaaaatggacatgtattttgaaacggaaggagtaat 25614630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 27021624 - 27021566
Alignment:
Q  25 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaa 83  Q
    ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||    
T  27021624 ataataaataattaaggttattatagaaaaaagacatagtttcatcaaaagtaacaaaa 27021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 40348997 - 40348960
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40348997 tctccaaaatggacatgtattttgaaacggaaggagta 40348960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 37983289 - 37983221
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||| |||| ||||||||  |||| ||| | | |||||||||||||||||||||    
T  37983289 aatataatgaaataataaatggttaaaggtattat--aaaaaacataaaatttcatcaaaaataacaaaat 37983221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 43002396 - 43002341
Alignment:
Q  121 aatactttaccttccccattcctaataaaatgg-aaataatagaataccaaagaaa 175  Q
    |||||| ||||||||||||||| ||||||||||  | |||||||||||||||||||    
T  43002396 aatactctaccttccccattccaaataaaatggctactaatagaataccaaagaaa 43002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3498893 - 3498966
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| ||||  ||||||||||||| | ||| |   |||||| ||||||||||||||    
T  3498893 aaataaaatgaaataataaatggttaaaagtattatagaaaagatacaaaaaatttcataaaaaataacaaaat 3498966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 10981545 - 10981508
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10981545 tctccaaaatggacatgtattttgaaacggagggagta 10981508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 25060149 - 25060186
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  25060149 tctccaaaatggacatgtattttgaaacggagggagta 25060186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 27813848 - 27813811
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  27813848 tctccaaaatggacatgtattttgaaacggagggagta 27813811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 28200335 - 28200298
Alignment:
Q  23 aaataataaatgattaagggtattatagaaaacacaca 60  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28200335 aaataataaatgattaaggatattatagaaaaaacaca 28200298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 36881418 - 36881347
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881418 aaataaaatgaaataataaataattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 36881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 198993 - 198920
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  198993 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 198920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 13364981 - 13364908
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13364981 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 13364908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 23088070 - 23088143
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23088070 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 23088143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 46694249 - 46694322
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  46694249 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 46694322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 19241810 - 19241880
Alignment:
Q  16 taaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  19241810 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 19241880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 3383214 - 3383141
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  3383214 aaataaaatgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 3383141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 43750275 - 43750202
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  43750275 aaatagaatgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaat 43750202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 29375272 - 29375203
Alignment:
Q  17 aaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  29375272 aaaaagaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaat 29375203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 19897067 - 19897139
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||| || ||||||||||||||  |||||||| | | |||||| ||||||||||||||    
T  19897067 aatagaatgaaataataaaagagtaagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaat 19897139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 27707127 - 27707172
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacaca 58  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||    
T  27707127 aaataaaaagaaataataaatggttaaggatattatagaaaacaca 27707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 198892 - 198852
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  198892 tctccaaaatggacatgtattttgaaacggagggagtaata 198852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 37781069 - 37781002
Alignment:
Q  19 aatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||| ||||  |||||||||  |||||||||| | ||||||||||||||| |||||    
T  37781069 aatgaaataataaatggttaatagtattatagaaaaaacacacagaatttcatcaaaaataataaaat 37781002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 38805282 - 38805238
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaatacttt 128  Q
    |||| |||||||||||||||||||||||||| |||||| ||||||    
T  38805282 tctctaaaatggacatgtattttaaaacggagggagtagtacttt 38805238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 18356007 - 18356053
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    |||| |||||||| |||||||| |||||||||||||||||| |||||    
T  18356007 aatagaatgaaatgataaatgagtaagggtattatagaaaaaacaca 18356053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 36881319 - 36881281
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaa 122  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  36881319 tctccaaaatggacatgtattttgaaacggagggagtaa 36881281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 3383113 - 3383076
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  3383113 tctccaaaatggacatatattttgaaacggaaggagta 3383076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 6901696 - 6901655
Alignment:
Q  19 aatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  6901696 aatgaaataataaatgagtaagggtattagagaaaaaacaca 6901655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 12094619 - 12094582
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  12094619 tctccaaaatggacatgtattttgaaacggagggagta 12094582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 13702890 - 13702834
Alignment:
Q  30 aaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    ||||| |||| |||||||||||||||| ||||||  |||||||||||||| ||||||    
T  13702890 aaatggttaaaggtattatagaaaacaaacatataatttcatcaaaaatatcaaaat 13702834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 29375175 - 29375138
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  29375175 tctccaaaatggacatgtattttgaaacggagggagta 29375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44522567 - 44522506
Alignment:
Q  23 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||| ||||  ||||||||||||| ||||||  |||||| |||||||| |||||    
T  44522567 aaataataaatggttaaaagtattatagaaaaaacacatgatttcataaaaaataataaaat 44522506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 46694350 - 46694390
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||| ||||||||||||| ||||||| |||||||||    
T  46694350 tctccaaaaaggacatgtattttgaaacggagggagtaata 46694390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 25704795 - 25704716
Alignment:
Q  7 aaaaacaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25704795 aaaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 25704716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 12071699 - 12071626
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12071699 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 12071626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 24706386 - 24706459
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  24706386 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 24706459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 34324721 - 34324794
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34324721 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 34324794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 21310559 - 21310490
Alignment:
Q  17 aaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  21310559 aaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 21310490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 22321406 - 22321479
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  22321406 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaat 22321479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40122624 - 40122697
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40122624 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 40122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 44568975 - 44568902
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  44568975 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaat 44568902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 50768002 - 50767929
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  50768002 aaataaaatgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaat 50767929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 14261182 - 14261109
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||| |||||||||||||||||    
T  14261182 aaataaaatgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaat 14261109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 21661674 - 21661747
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| |||||    
T  21661674 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaat 21661747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 21670438 - 21670511
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| |||||    
T  21670438 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaat 21670511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 20249152 - 20249224
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  20249152 aaatagaataaaataataaatggttaagggtattatagaaacacacacataatttcttcaaaaataacaaaat 20249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 21064904 - 21064834
Alignment:
Q  7 aaaaacaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaata 77  Q
    ||||| ||||| |||||||||||||||  ||||| |||||||| |||||||||||| ||||||||||||||    
T  21064904 aaaaaaaaatagaatgaaataataaatagttaagagtattataaaaaacacacataatttcatcaaaaata 21064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 32543617 - 32543547
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattat-agaaaacacacatattttcatcaaaaataacaaaa 83  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||| ||||||||    
T  32543617 aataaaatgaaataataaatgattaagggtattataaaaaaacacaaagaatttcatcaaaattaacaaaa 32543547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 20714488 - 20714560
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||| |||||| ||||||||||||   |||||||| |||||||||||||||||||||    
T  20714488 aatataatgaaataataaatggttaagg-tattatagaaaaacacacacatagtttcatcaaaaataacaaaat 20714560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 31892372 - 31892303
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||| | || ||||||||||||||  |||||| ||||||||||||||| |||||    
T  31892372 aaatagaatgaaataataaatggtcaaaggtattatagaaaa--cacataatttcatcaaaaataataaaat 31892303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 22321507 - 22321544
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22321507 tctccaaaatggacatgtattttgaaacggaaggagta 22321544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 6129093 - 6129160
Alignment:
Q  19 aatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||| ||||||| | ||| |   ||| |||||||||||||||||    
T  6129093 aatgaaataataaatgattaagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaat 6129160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 1988150 - 1988100
Alignment:
Q  36 ttaagggtattatagaaaacac--acatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||| |||||    
T  1988150 ttaagggtattatagaaaacacatacataatttcatcaaaaataataaaat 1988100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 19692860 - 19692814
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    |||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  19692860 aatagaatgaaataataaatgagtaaggatattatagaaaaaacaca 19692814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 19703445 - 19703399
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    |||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  19703445 aatagaatgaaataataaatgagtaaggatattatagaaaaaacaca 19703399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 12071598 - 12071561
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  12071598 tctccaaaatggacatgtattttgaaacggagggagta 12071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 14261081 - 14261044
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  14261081 tctccaaaatggacatgtattttgaaacggagggagta 14261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 21310462 - 21310425
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  21310462 tctccaaaatggacatgtattttgaaacggagggagta 21310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 24706487 - 24706524
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  24706487 tctccaaaatggacatgtattttgaaacggatggagta 24706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 25704688 - 25704651
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  25704688 tctccaaaatggacatgtattttgaaacggagggagta 25704651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 26676714 - 26676751
Alignment:
Q  22 gaaataataaatgattaagggtattatagaaaacacac 59  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  26676714 gaaataataaatgagtaagggtattatagaaaaaacac 26676751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 34324823 - 34324860
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  34324823 tctccaaaatggacatgtattttgaaacggagggagta 34324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 40122725 - 40122762
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  40122725 tctccaaaatggacatgtattttgaaacggagggagta 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 44568870 - 44568837
Alignment:
Q  88 caaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||| ||||||||||||||    
T  44568870 caaaatggacatgtattttgaaacggaaggagta 44568837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 51777755 - 51777687
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaa 83  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| ||||| | ||| ||||||| ||| ||||    
T  51777755 aataacatgaaataataaatggttaagagtattatagaaaa-acacagaattttatcaaaattaaaaaaa 51777687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 38 - 111
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 10285196 - 10285269
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  10285196 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 10285269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 12806992 - 12807065
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  12806992 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 12807065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 25773787 - 25773714
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25773787 aaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaat 25773714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40886749 - 40886822
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40886749 aaataaaatgaaataataaatgattaagggtattatagaaaatacacacatattttcatcaaaaataacaaaat 40886822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 30720631 - 30720704
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  30720631 aaataaaatgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaat 30720704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 36561238 - 36561311
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  36561238 aaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaat 36561311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 37900758 - 37900836
Alignment:
Q  8 aaaacaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat 84  Q
    |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  37900758 aaaaaaaatagaatgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaat 37900836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 7277561 - 7277634
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| |||||||||||||||| |||| |||||||||||||  ||||||||| ||| |||||||||||||||||    
T  7277561 aaatataatgaaataataaatggttaaaggtattatagaaaacacacacataatttgatcaaaaataacaaaat 7277634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 25683367 - 25683440
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||||||||||||  ||||||||| ||| |||||||||||||||||    
T  25683367 aaatagaataaaataataaatggttaagggtattatagaaaacacacacataattttatcaaaaataacaaaat 25683440  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 30403101 - 30403174
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||||||||||||| ||||||||||| |||||||||   |||| ||||| | |||||||||||||||||||||    
T  30403101 aataaaatgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaat 30403174  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 23098386 - 23098446
Alignment:
Q  26 taataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    ||||||||| ||||||||||||||| |||||  |||||| |||||||||||||||||||||    
T  23098386 taataaatggttaagggtattataggaaacatgcacataatttcatcaaaaataacaaaat 23098446  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 734478 - 734549
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||| | | ||||||||| ||| |||||||    
T  734478 aatagaatgaaataataaatgagtaagggtattatagaaaaacacaaagaatttcatcaataatgacaaaat 734549  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 16054249 - 16054179
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| ||| |||||||||||| | |||| |||||||||||| ||||| | |||||| ||||||||||||||    
T  16054249 aatagaataaaataataaatggtcaaggatattatagaaaaaacacaaaatttcataaaaaataacaaaat 16054179  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 39071020 - 39070974
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 60  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||    
T  39071020 aatagaatgaaataataaatgagtaagggtattatagaaaaaacaca 39070974  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 11319696 - 11319656
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatagaaaa 54  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  11319696 aatagaatgaaataataaatgagtaagggtattatagaaaa 11319656  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 30720732 - 30720772
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  30720732 tctccaaaatggacatgtattttgaaacggagggagtaata 30720772  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 1056422 - 1056493
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||||| ||  ||||||||| |||||||| | | |||||| ||||||||||||||    
T  1056422 aatataatgaaataataaatgatcaatagtattatagaaaaacacaaagaatttcattaaaaataacaaaat 1056493  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 15305228 - 15305270
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaatact 126  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||    
T  15305228 tctccaaaatggacatgtattttgaaacggagggagtactact 15305270  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 12807093 - 12807130
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  12807093 tctccaaaatggacatgtattttgaaacggagggagta 12807130  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 15304859 - 15304822
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  15304859 tctctaaaatggacatgtattttaaaacggagggagta 15304822  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 25773686 - 25773649
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  25773686 tctccaaaatggacatgtattttgaaacggagggagta 25773649  T

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Target: scaffold0062 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 404 - 475
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  404 aaatagaatgaaataataaatgattaagggtattataaaaaacacacataattttatcaaaaataacaaaat 475  T

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Target: scaffold1770 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 300 - 227
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaat 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  300 aaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaat 227  T

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Target: scaffold0054 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 45592 - 45519
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaaaaataacaaaat 84  Q
    ||||| ||| |||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  45592 aaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaat 45519  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 65302 - 65375
Alignment:
Q  13 aaataaaatgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaa 83  Q
    ||||| |||||||||||||||| |||||||||||||||   |||||||| ||| ||||||||||||||| ||||    
T  65302 aaatagaatgaaataataaatggttaagggtattatagaaaaaaacacatataatttcatcaaaaataataaaa 65375  T

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Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 70961 - 70889
Alignment:
Q  14 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaat 84  Q
    |||| |||||||||||||||| |||||||| ||| ||  |||||||||| | |||||||||||||||||||||    
T  70961 aatagaatgaaataataaatggttaagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaat 70889  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 23504 - 23467
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagta 121  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  23504 tctccaaaatggacatgtattttgaaacggagggagta 23467  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 23876 - 23916
Alignment:
Q  84 tctccaaaatggacatgtattttaaaacggaaggagtaata 124  Q
    |||| |||||||||||||||||| ||||||| |||||||||    
T  23876 tctctaaaatggacatgtattttgaaacggatggagtaata 23916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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