View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514_low_1 (Length: 871)
Name: NF5514_low_1
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 276 - 855
Target Start/End: Original strand, 24565744 - 24566312
Alignment:
| Q |
276 |
ttaatcagcatgcatggactattggagtagtggagatgaagacacggtatgatagactaatttaagcacctagtccctagacaagggtctttgtttcttt |
375 |
Q |
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| T |
24565744 |
ttaatcagcatgcatggactattggagtagtggagatgaagacacggtatgatagactaatttaagcacctagtccctagacaagggtctttgtttcttt |
24565843 |
T |
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| Q |
376 |
gttattagtacttagtagagtggaatggtgaatcttgaggttatccaatgttactagtgtatatggatgggtaaatacggatcaactcgaatatacccaa |
475 |
Q |
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| T |
24565844 |
gttattag-------tagagtggaatggtgaatcttgaggttatccaatgttactagtgtacatggatgggtaaatacggatcaactcgaatatacccaa |
24565936 |
T |
|
| Q |
476 |
caaaaccggtgcaagtttatacactcggtttaggttaaaacggatcatggattggtcgggtgaacattataggttgttgtgattacattcggtttgttat |
575 |
Q |
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| T |
24565937 |
caaaaccgatgcaagtttatacactcggttcaggttaaaacggatcatggattggtcgggtgaatattataggttgttgtgattacattcggtttgttat |
24566036 |
T |
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| Q |
576 |
tttgaacccgtactaacccgaaaaacccgtgaacttactaatagacnnnnnnnnnnnnnnnnnaattcaagcccaacatatcacctagagnnnnnnnnnn |
675 |
Q |
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| T |
24566037 |
tttgaacccgtactaacccaaacaacctgtgaacttactaatagac-----tcttttttttttaattcaagcccaacatatcacctagagaaaaagaaaa |
24566131 |
T |
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| Q |
676 |
nntaactttatcagtgatttcataatcagaataaaa-aatcctacctatattaattgacccaaagagaattaatatcattcataggattttaagttcaat |
774 |
Q |
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|||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
24566132 |
aataactttatcggtgatttcataatcagaataaaagaatcttacctatattaattgacccaaagagaattactatcattcattggattttaagttcaat |
24566231 |
T |
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| Q |
775 |
ctcttatctccatctgcgatttcatagtccgacgttccatctccaactatttttcttcgttcagaatccagcccatataat |
855 |
Q |
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| T |
24566232 |
ctcttatctccatctgcgatttcatagtcagtcgttccatctccaactatttttcttcgttcagaatccagtccatataat |
24566312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 24565513 - 24565756
Alignment:
| Q |
18 |
tgtgggggctgaacataagtgagcagtcacactccca-cgatcatgactccacgtggcggtagggatattgctacgatgggtctaaattgcaaagtggaa |
116 |
Q |
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| T |
24565513 |
tgtgggggctgaacatgagtgagcagtcacactccccgcggtcatgactccacgtggcggtagtgatattgctacgatgggtctaaattgcaaagtggaa |
24565612 |
T |
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| Q |
117 |
gacgtagacttgtgtgacaagacatgaatgtgatgtgaagggtaggcattggctgtagccaatagtattttggggatggaaatgatgtgtttggtggctt |
216 |
Q |
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| T |
24565613 |
gacgtagacttgtgtgacaagacatgaatgtgatgtgaagggtaggcattggctgtagcctatagtattttggggatggaaatgatgtgtttggtggctt |
24565712 |
T |
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| Q |
217 |
aattgcaacgcagaatgcagtattaagcaaattaatcagcatgc |
260 |
Q |
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| T |
24565713 |
aattgcaacgcagaatgcattattaagcaaattaatcagcatgc |
24565756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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