View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514_low_2 (Length: 584)
Name: NF5514_low_2
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 43260328 - 43260904
Alignment:
| Q |
1 |
ttactatattctgcattattgagtgttatctagtctcagtcacctatcaaaaaa-ccacttcaacagaacacagtgcatt---gtttaccaaatcaaatt |
96 |
Q |
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| T |
43260328 |
ttactatattctgcattattgagtgttatctagtctcagtcacctatcaaaaaaaccacttcaacagaacacagtgcattattgtttaccaaatcaaatt |
43260427 |
T |
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| Q |
97 |
ctaatttccatggaacttgatgcttcatcaacttcaaacggttacttgttcatcctcaaaggactttctctcattccaatatggcattacctcctcactc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43260428 |
ctaatttccatggaacttgatgcttcatcaacttcaaacggttacttgttcatcctcaaaggactttctctgattccaatatggcattacctcctcactc |
43260527 |
T |
|
| Q |
197 |
taactactcttcttacttgctttctctacaatttccttgaaattcatttccttcaagatctcttctctggattctcatgctctccagctgagttcagtta |
296 |
Q |
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| T |
43260528 |
taactactcttcttacttgctttctctacaatttccttgaaatccatttccttcaagatctcttctctggattctcatgctctccagctgagttcagtta |
43260627 |
T |
|
| Q |
297 |
caactcttgttcccaaatctacgacgccgtcgtttcaaagtgtccaattcttcaaggtggatattctgttacaccatggctttccagtcctcatcttcaa |
396 |
Q |
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| T |
43260628 |
caactcttgttcccaaatctacgacgccgtcgtttcaaagtgtccaattcttcaaggcggatattctgttacaccatggctttccagtcctcatcttcaa |
43260727 |
T |
|
| Q |
397 |
accattttcctcaacttcttcgggaatgctccatctttcaaatataaaaggtcacaactgttatttcacattttcattcttagtcttttcttgtatatgc |
496 |
Q |
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| T |
43260728 |
accattttcctcaacttctttgggaatgctccatctttcaaatataaaaggtcacaactgttatttcacattttcattcttagtcttttcttgtatatgc |
43260827 |
T |
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| Q |
497 |
atcgatgaatatagtataaattaaatcttagtagtttattggtttcaatttcagacaattgtttactacttctgatg |
573 |
Q |
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| T |
43260828 |
atcaatgaatatagtataaattaaatcttagtagtttattggtttcaatttcagacaattgtttactacttctgatg |
43260904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 454
Target Start/End: Original strand, 43270726 - 43270960
Alignment:
| Q |
220 |
ctctacaatttccttgaaattcatttccttcaagatctcttctctggattctcatgctctccagctgagttcagttacaactcttgttcccaaatctacg |
319 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||| || | |||||||| |||| | | | |||| |||||||| | ||| ||||||| |
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| T |
43270726 |
ctctacaatttcctcgaaatccatttcctccaagatctcctcaccggattctccggctccaccgtccacttcacctacaactcctcatccgttatctacg |
43270825 |
T |
|
| Q |
320 |
acgccgtcgtttcaaagtgtccaattcttcaaggtggatattctgttacaccatggctttccagtcctcatcttcaaaccattttcctcaacttcttcgg |
419 |
Q |
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| T |
43270826 |
atgccgtcgtttctaagtgccggattcttcacggcagatactccgtcacgccttggctttctagtcctcatcttcaaactgtttttcttaacttcttcgg |
43270925 |
T |
|
| Q |
420 |
gaatgctccatctttcaaatataaaaggtcacaac |
454 |
Q |
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||| |||| |||| ||||| ||||||||||||| |
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| T |
43270926 |
aaatcctcctacttttaaatacaaaaggtcacaac |
43270960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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