View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514_low_3 (Length: 445)
Name: NF5514_low_3
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 7768681 - 7768254
Alignment:
| Q |
19 |
tttgatatattggaaaaatcaagtcccgtgttgattaaagatgaagcctcgacagagtttataaagagtgacataacgggaatgatggtgtgatataaag |
118 |
Q |
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| T |
7768681 |
tttgatatattggaaaaatcaagtcccgtgttgattaaagatgaagcctcgacagagtttataaagagtgacataacgggaacgatggcgtgatataaag |
7768582 |
T |
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| Q |
119 |
gtatttacagcaaaaatatcaagtacatagccaaatgcctaaagtca-----gagactattcgctgtgaaattcccagctgccaacagacgcatcgcttg |
213 |
Q |
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| T |
7768581 |
gtatttacagcaaaaatatcaagtacatagccaaatgcctaaagtcaagtcagagactattcgctgtgaaattcccagctgccaacagacgcatcgcttg |
7768482 |
T |
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| Q |
214 |
atttctagggagcaagctgacaacagaagcgtggcttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttg |
313 |
Q |
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| T |
7768481 |
atttctagggagcaagctgacaacagaagcgtggcttgatttcctggaagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttg |
7768382 |
T |
|
| Q |
314 |
ttaattatgttcaaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatg |
413 |
Q |
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| T |
7768381 |
ttaattatgttcaaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatg |
7768282 |
T |
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| Q |
414 |
atcttttactgctactcctttgcttctc |
441 |
Q |
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| T |
7768281 |
atcttttactgctactcctttgcttctc |
7768254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 7779471 - 7779290
Alignment:
| Q |
248 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttgtt---------------aattatgttcaaaaatg |
332 |
Q |
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| T |
7779471 |
cttgatttcttgggagcactgttgcggcctttgtcagactgcgatgaatcgatcttttttctcttatttttctgggaatcaccaattatgttcaaaaatg |
7779372 |
T |
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| Q |
333 |
catctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatga |
414 |
Q |
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| T |
7779371 |
catctctccttgaactatgcatattcttaatacacgcaatggcagctttattttcatgattgccatttgactgatatgatga |
7779290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 7774560 - 7774452
Alignment:
| Q |
336 |
ctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgactt---gtatgatgatcttttactgctactcct |
432 |
Q |
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| T |
7774560 |
ctcttcttgaaccattcatattcttaagatatgcaatgtcagctttattttgaggattgtcatttgacttataataggaagatcttttactgctactccg |
7774461 |
T |
|
| Q |
433 |
ttgcttctc |
441 |
Q |
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| T |
7774460 |
ttgcttctc |
7774452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 7774660 - 7774604
Alignment:
| Q |
248 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttt |
304 |
Q |
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| T |
7774660 |
cttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt |
7774604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 12815012 - 12815058
Alignment:
| Q |
138 |
caagtacatagccaaatgcctaaagtcagagactattcgctgtgaaa |
184 |
Q |
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| T |
12815012 |
caagtacacagccaaatgcctaaagtcaaagactattcactgtgaaa |
12815058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 12752229 - 12752297
Alignment:
| Q |
325 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
393 |
Q |
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| T |
12752229 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12752297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 12815189 - 12815257
Alignment:
| Q |
325 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
393 |
Q |
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|||||||||| |||||||||||||| |||||||| | ||||| | ||||||||||||||| |||||| |
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| T |
12815189 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12815257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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