View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5514_low_5 (Length: 340)
Name: NF5514_low_5
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5514_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 32853079 - 32852759
Alignment:
| Q |
1 |
atattcaatcacttggttatggagacccaaaaaatctaaaaactgannnnnnnn-cttcttataataaggaccaggaagtattgtatttgaccataagtt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32853079 |
atattcaatcacttggttatggagacccaaaaaatctaaaaactgatttttttttcttcttataataaggacgaggaagtattgtatttgaccataagtt |
32852980 |
T |
|
| Q |
100 |
taggaattgattatgtttcagtagattcatatgaaaaaacttcagtatgaactcacatgtctttccaattcttcactgctttcttgcagttttgctttta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32852979 |
taggaattgattatgtttcagtagattcatatgaaaaaacttcagtatgaactcacatgtctttccaattcttcactgctttcttgcagttttgctttta |
32852880 |
T |
|
| Q |
200 |
ataccctgttgtatccacattattctgtagcagtgtctttcaatgatatttcttggttttttgccagtacaaaacgcttgaagtttccaacttctctgct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32852879 |
ataccctgttgtatccacattattctgtagcagtgtctttcaatgatatttcttggttttttgccagtacaaaacgcttgaagtttccaacttctctgct |
32852780 |
T |
|
| Q |
300 |
ggattattgtatcatcctaat |
320 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
32852779 |
ggattattgtatcatcctaat |
32852759 |
T |
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