View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5514_low_6 (Length: 284)

Name: NF5514_low_6
Description: NF5514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5514_low_6
NF5514_low_6
[»] chr7 (9 HSPs)
chr7 (12-259)||(31076915-31077153)
chr7 (84-260)||(42417438-42417605)
chr7 (12-53)||(42417577-42417618)
chr7 (218-260)||(41406987-41407029)
chr7 (218-260)||(42418225-42418267)
chr7 (227-259)||(43103834-43103866)
chr7 (192-255)||(26782443-26782505)
chr7 (192-255)||(26786535-26786597)
chr7 (226-260)||(31077763-31077797)
[»] chr3 (6 HSPs)
chr3 (84-260)||(33565360-33565527)
chr3 (187-260)||(33336234-33336307)
chr3 (194-248)||(20518984-20519037)
chr3 (12-53)||(33565499-33565540)
chr3 (218-257)||(46889330-46889369)
chr3 (191-255)||(20111171-20111235)
[»] chr4 (4 HSPs)
chr4 (84-260)||(50185942-50186109)
chr4 (218-260)||(50185280-50185322)
chr4 (12-45)||(50185929-50185962)
chr4 (227-257)||(1866252-1866282)
[»] chr5 (13 HSPs)
chr5 (84-257)||(33573905-33574068)
chr5 (218-259)||(4084774-4084815)
chr5 (197-260)||(33574130-33574193)
chr5 (218-259)||(10951286-10951327)
chr5 (12-53)||(33573892-33573933)
chr5 (227-259)||(27365647-27365679)
chr5 (184-255)||(18861899-18861968)
chr5 (192-255)||(31021694-31021756)
chr5 (193-259)||(19119657-19119722)
chr5 (218-260)||(33573255-33573297)
chr5 (218-260)||(38486975-38487017)
chr5 (227-259)||(22798859-22798891)
chr5 (227-259)||(27364596-27364628)
[»] chr1 (7 HSPs)
chr1 (218-259)||(28764409-28764450)
chr1 (227-259)||(10920147-10920179)
chr1 (187-224)||(1469579-1469616)
chr1 (191-240)||(12644854-12644903)
chr1 (197-257)||(2071455-2071514)
chr1 (187-255)||(15418235-15418302)
chr1 (227-259)||(23818283-23818315)
[»] scaffold0019 (2 HSPs)
scaffold0019 (192-255)||(74641-74703)
scaffold0019 (192-255)||(102837-102899)
[»] chr8 (1 HSPs)
chr8 (218-260)||(45107991-45108033)
[»] chr6 (4 HSPs)
chr6 (192-250)||(15654808-15654865)
chr6 (192-250)||(33485162-33485219)
chr6 (192-250)||(33489247-33489304)
chr6 (193-257)||(1859772-1859835)
[»] chr2 (2 HSPs)
chr2 (219-260)||(33739349-33739390)
chr2 (219-260)||(33739413-33739454)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 31077153 - 31076915
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcagaaacctattgagagcagagggtcacgatgaatacagggagaaggaagccaacgtttca 111  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  31077153 agagaagccatggatacagggagaaggaagctgatgtttcagaaacctattgagaggagagggtcacgatgaatacaaggagaaggaagcaaacgtttca 31077054  T
Q  112 gtttcaactagggataggg-aaagagagtatcgtacgagtcatagaagtaacatttaatcacagccatctaatttaatctaatttaatctaagggtcatt 210  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  31077053 gtttcagctggggatagggaaaagagagtatcatacgagtcatagaagtaacatttaatcacagcc----------atctaatttaatctaagggtcatt 31076964  T
Q  211 atttcaccctctcaccctctcattataaaatgtcctctcacttgataca 259  Q
    |||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  31076963 attttatcctctcaccctctcattataaaatgtcatctcacttgataca 31076915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 42417605 - 42417438
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcgtacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  42417605 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 42417506  T
Q  183 tttaatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||          |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  42417505 tttaat----------ctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacat 42417438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42417618 - 42417577
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  42417618 agagaagccatggatacagggagaaggaagccaacgtttcag 42417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 41406987 - 41407029
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  41406987 cctctcaccctctcattataaaatgtcatctcatttgatacat 41407029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 42418225 - 42418267
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  42418225 cctctcaccctctcattttaaaatgtcctctcatttgatacat 42418267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 43103866 - 43103834
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    |||||||||||||||||||||||||||||||||    
T  43103866 ctctcattataaaatgtcctctcacttgataca 43103834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 26782505 - 26782443
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||||| ||||    
T  26782505 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatttga 26782443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 26786535 - 26786597
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||||| ||||    
T  26786535 atttaatcgaagggccattatttcaccctctca-tctctcattataaatagtcctctcatttga 26786597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 31077763 - 31077797
Alignment:
Q  226 cctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||||||||||| |||||||||    
T  31077763 cctctcattataaaatgtcctctcatttgatacat 31077797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 33565527 - 33565360
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcgtacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  33565527 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagccatctaa 33565428  T
Q  183 tttaatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||          |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  33565427 tttaat----------ctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacat 33565360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 33336307 - 33336234
Alignment:
Q  187 atctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    |||||||||||||||||||| ||||| ||  || |||||||||| ||||||||||||||||||| |||| ||||    
T  33336307 atctaatttaatctaagggttattatctcttccactcaccctcttattataaaatgtcctctcatttgaaacat 33336234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 20518984 - 20519037
Alignment:
Q  194 ttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctct 248  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  20518984 ttaatctaagggccattatttcaccctctca-cctctcattataaaatctcctct 20519037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33565540 - 33565499
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  33565540 agagaagccatggatacagggagaaggaagccaacgtttcag 33565499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 46889369 - 46889330
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgata 257  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  46889369 cctctcaccctctcattataaaatgtcctctcatttgata 46889330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 20111235 - 20111171
Alignment:
Q  191 aatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    ||||||||||||||||  |||||| | ||||||| ||||||||| |||||   ||||||||||||    
T  20111235 aatttaatctaagggttcttatttaatcctctcatcctctcattttaaaaccccctctcacttga 20111171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 260
Target Start/End: Original strand, 50185942 - 50186109
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcgtacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||          
T  50185942 atacagggagaaggaagccaacatttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagcc------ 50186035  T
Q  183 tttaatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
        |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  50186036 ----atctaatttaatctaagggtcattatttcatcctctcaccctctcattctaaaatgtcctctcacttgatacat 50186109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 50185322 - 50185280
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  50185322 cctctcaccctctcattttaaaatgtcctctcatttgatacat 50185280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 50185929 - 50185962
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaa 45  Q
    ||||||||||||||||||||||||||||||||||    
T  50185929 agagaagccatggatacagggagaaggaagccaa 50185962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 1866252 - 1866282
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgata 257  Q
    |||||||||||||||||||||||||||||||    
T  1866252 ctctcattataaaatgtcctctcacttgata 1866282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 33573905 - 33574068
Alignment:
Q  84 atacagggagaaggaagccaacgtttcagtttcaactagggatagggaaa-gagagtatcgtacgagtcatagaagtaacatttaatcacagccatctaa 182  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||          
T  33573905 atacagggagaaggaagccaacgtttcagtttcagctagggataaggaaaagagagtatcatacgagtcatagaagtgacatttaatcacagcc------ 33573998  T
Q  183 tttaatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgata 257  Q
        |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  33573999 ----atctaatttaatctaagggtcattatttcatcctctcaccctctcattttaaaa-gtcctctcacttgata 33574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 4084774 - 4084815
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4084774 cctctcaccctctcattataaaatgtcctctcacttgataca 4084815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 33574193 - 33574130
Alignment:
Q  197 atctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    |||||| ||| || |||| | ||||||||||||||||| |||||||||||||||||||||||||    
T  33574193 atctaaaggttataatttaatcctctcaccctctcattctaaaatgtcctctcacttgatacat 33574130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 10951327 - 10951286
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  10951327 cctctcaccctctcattataaaatgccctctcacttgataca 10951286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33573892 - 33573933
Alignment:
Q  12 agagaagccatggatacagggagaaggaagccaatgtttcag 53  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  33573892 agagaagccatggatacagggagaaggaagccaacgtttcag 33573933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 27365647 - 27365679
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    |||||||||||||||||||||||||||||||||    
T  27365647 ctctcattataaaatgtcctctcacttgataca 27365679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 18861968 - 18861899
Alignment:
Q  184 ttaatctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    ||||||||||||||||||| ||| |  |||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  18861968 ttaatctaatttaatctaatggttagcatttaaccctctca-cctctcattttaaaa-gtcctctcacttga 18861899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 31021694 - 31021756
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||||| ||||    
T  31021694 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatttga 31021756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 19119657 - 19119722
Alignment:
Q  193 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||||||||||   ||||||| ||||||||||||| |  |||||||| ||||||||    
T  19119657 tttaatctaagggtcattatttattcctctcatcctctcattataaca-ctcctctcatttgataca 19119722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 33573297 - 33573255
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||| ||||||||| ||||||||||||||| |||||||||    
T  33573297 cctctcagcctctcattttaaaatgtcctctcatttgatacat 33573255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 38487017 - 38486975
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  38487017 cctctcaccctctcattataaatagtgctctcacttgatacat 38486975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 22798859 - 22798891
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||| |||||||||||||||||    
T  22798859 ctctcattataaaatttcctctcacttgataca 22798891  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 27364628 - 27364596
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||||| |||||||||||||||    
T  27364628 ctctcattataaaatgtactctcacttgataca 27364596  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 28764409 - 28764450
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28764409 cctctcaccctctcattataaaatgtcctctcacttgataca 28764450  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 10920147 - 10920179
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    |||||||||||||||||||||||||||||||||    
T  10920147 ctctcattataaaatgtcctctcacttgataca 10920179  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 1469579 - 1469616
Alignment:
Q  187 atctaatttaatctaagggtcattatttcaccctctca 224  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  1469579 atctcatttaatccaagggtcattatttcaccctctca 1469616  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 12644854 - 12644903
Alignment:
Q  191 aatttaatctaagggtcattatttcaccctctcaccctctcattataaaa 240  Q
    ||||||||||||||||  |||||| | ||||||||||||||||| |||||    
T  12644854 aatttaatctaagggttcttatttaatcctctcaccctctcattttaaaa 12644903  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 2071455 - 2071514
Alignment:
Q  197 atctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgata 257  Q
    |||||| ||| || |||| | ||||||||||||||||| ||||| ||||||||||||||||    
T  2071455 atctaaaggttatgatttaatcctctcaccctctcattttaaaa-gtcctctcacttgata 2071514  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 15418302 - 15418235
Alignment:
Q  187 atctaatttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||| ||||| ||| |||||||||||||||||||||  |||||||| ||||| ||| ||||| ||||    
T  15418302 atctaagttaatttaatggtcattatttcaccctctca-tctctcattttaaaaagtcatctcatttga 15418235  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 23818283 - 23818315
Alignment:
Q  227 ctctcattataaaatgtcctctcacttgataca 259  Q
    ||||||||||||||| |||||||||||||||||    
T  23818283 ctctcattataaaatatcctctcacttgataca 23818315  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 74703 - 74641
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||||| ||||    
T  74703 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatttga 74641  T

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Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 102837 - 102899
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttga 255  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  ||||||||| ||||    
T  102837 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctcatttga 102899  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 45107991 - 45108033
Alignment:
Q  218 cctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    ||||||||||||||||||||||  || ||||||||||||||||    
T  45107991 cctctcaccctctcattataaatagtactctcacttgatacat 45108033  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 15654865 - 15654808
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctca 250  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||||    
T  15654865 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctca 15654808  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 33485219 - 33485162
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctca 250  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||||    
T  33485219 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctca 33485162  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 33489247 - 33489304
Alignment:
Q  192 atttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctca 250  Q
    |||||||| ||||| ||||||||||||||||||  |||||||||||||  |||||||||    
T  33489247 atttaatccaagggccattatttcaccctctca-tctctcattataaatggtcctctca 33489304  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 1859772 - 1859835
Alignment:
Q  193 tttaatctaagggtcattatttcaccctctcaccctctcattataaaatgtcctctcacttgata 257  Q
    |||||||||| ||||||| |||   ||||||| | ||||||| ||||||||||||||||||||||    
T  1859772 tttaatctaatggtcattttttattcctctcatc-tctcattttaaaatgtcctctcacttgata 1859835  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 33739349 - 33739390
Alignment:
Q  219 ctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    |||||||||||||||||||| | ||||||||| |||||||||    
T  33739349 ctctcaccctctcattataagaagtcctctcatttgatacat 33739390  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 33739413 - 33739454
Alignment:
Q  219 ctctcaccctctcattataaaatgtcctctcacttgatacat 260  Q
    |||||||||||||||||||| | ||||||||| |||||||||    
T  33739413 ctctcaccctctcattataagaagtcctctcatttgatacat 33739454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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