View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5515-Insertion-2 (Length: 1044)

Name: NF5515-Insertion-2
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5515-Insertion-2
NF5515-Insertion-2
[»] chr4 (3 HSPs)
chr4 (8-626)||(53938695-53939303)
chr4 (683-893)||(53939360-53939570)
chr4 (948-1044)||(53939650-53939747)
[»] scaffold0031 (2 HSPs)
scaffold0031 (777-846)||(99703-99773)
scaffold0031 (777-846)||(99919-99989)
[»] chr5 (1 HSPs)
chr5 (803-846)||(41959515-41959558)
[»] chr1 (1 HSPs)
chr1 (785-846)||(32365144-32365206)
[»] chr3 (2 HSPs)
chr3 (805-846)||(40415315-40415356)
chr3 (805-846)||(52931591-52931632)
[»] chr2 (1 HSPs)
chr2 (812-888)||(3853907-3853984)


Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 8 - 626
Target Start/End: Original strand, 53938695 - 53939303
Alignment:
Q  8 cacaatgcttgcttgcagcctctcttacgtaagacaaagatatcaacatgcaactaaagatcggtgctatagctagctgcatgcatgtgatgtgtgaacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53938695 cacaatgcttgcttgcagcctctcttacgtaagacaaagatatcaacatgcaactaaagatcggtgctatagctagctgcatgcatgtgatgtgtgaacc 53938794  T
Q  108 aaccaattgatatctttgtcttagtttagacactttgctatttccatgttacaattattaaactattgcttgtattgtgtgtaacactagcggtgtag-- 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      
T  53938795 aaccaattgatatctttgtcttagtttagacactttgctatttccatgttacaattattaaactattgcttatattgtgtgtaacactagcggtgtagta 53938894  T
Q  206 -gggctgaatccaatttagggttttgatttattgctaaaaaacgggtgggttttcgataacggaaggaaggaatcaattcagttttctactcacgagctg 304  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53938895 ggggctgaatccaatttagggttttgatttattgctaaaaaacgggtgggttttcgataacggaaggaaggaatcaattcagttttctactcacgagctg 53938994  T
Q  305 gctaagaagtgacctattgattgatggtacaataaaactttgcaattgatattgcctttttaatttcctttttagttgtggaatagggatagtactatga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53938995 gctaagaagtgacctattgattgatggtacaataaaactttgcaattgatattgcctttttaatttcctttttagttgtagaatagggatagtactatga 53939094  T
Q  405 ggatgaatctatacctgtaactgtaaatgacgatgctatgtggctattggctatatatatgctaacactttgccatattcgcaagggaccttcccctatt 504  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53939095 ggatgaaactatacctgtaactgtaaatgacgatgctatgtggctattggctatatatatgctaacactttgccatattcgcaagggaccttcccctatt 53939194  T
Q  505 tgctcatcaatattgaagttctacttcttggannnnnnnnnnnaaaccgttttgtcgtatagcgtgagtttcattttaagtttaaatatactctttaatt 604  Q
    |||||||||||||||||||||||||||||||             ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53939195 tgctcatcaatattgaagttctacttcttgg-------------aattgttttgtcgtatagcgtgagtttcattttaagtttaaatatactctttaatt 53939281  T
Q  605 tatgtaaatataacagtaacta 626  Q
    ||||||||||||||||||||||    
T  53939282 tatgtaaatataacagtaacta 53939303  T

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Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 683 - 893
Target Start/End: Original strand, 53939360 - 53939570
Alignment:
Q  683 gtgtgaccggttgaagagaaataaagaagaaagagtatggtgtgaaggagaaatcaaatatagtgcgtgtttggttgtatgatggtaaagattgaattaa 782  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| |    
T  53939360 gtgtgatcggttgaagagaaataaagaagaaagagtatggtgtgaaggagaaatcaaatatggtgcgtgtttggttgtctggtggtaaagattgaattga 53939459  T
Q  783 taaaattgattttaagataataattttagttaaaagtgagttgagagtaaattaatttatgttttgatcattaatgtatatttgatttttatcaattcat 882  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53939460 taaaattgattttaagataataattttagttaaaagtgagttgagagtaaattaatttatgttttgatcattaatgtatatttgatttttatcaattcat 53939559  T
Q  883 gttgttgggtc 893  Q
    |||||| ||||    
T  53939560 gttgtttggtc 53939570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 948 - 1044
Target Start/End: Original strand, 53939650 - 53939747
Alignment:
Q  948 ttaattgtacaaattgttaaagggcaactacataataaagtaaagtgtagcaccataaatacttgaaatcgattataataaaagtag-agctacacat 1044  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  53939650 ttaattgtacaaattgttgaagggcaactacataataaagtaaagtgtagcaccataaatacttgaaatcgattctaataaaagtagaagctacacat 53939747  T

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Target: scaffold0031 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 777 - 846
Target Start/End: Complemental strand, 99773 - 99703
Alignment:
Q  777 aattaataaaattgattttaagataata-attttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    ||||||| ||||||||||||| |||||  |||||| |||||||||||||||  ||||||||||||||||||    
T  99773 aattaatgaaattgattttaacataattgattttaattaaaagtgagttgaatgtaaattaatttatgttt 99703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 777 - 846
Target Start/End: Complemental strand, 99989 - 99919
Alignment:
Q  777 aattaataaaattgattttaagataata-attttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    ||||||| ||||||||||||| |||||  |||||| |||||||||||||||  ||||||||||||||||||    
T  99989 aattaatgaaattgattttaacataattgattttaattaaaagtgagttgaatgtaaattaatttatgttt 99919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 846
Target Start/End: Complemental strand, 41959558 - 41959515
Alignment:
Q  803 taattttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    |||||||||||||||||||||| | ||| |||||||||||||||    
T  41959558 taattttagttaaaagtgagttaaaagtgaattaatttatgttt 41959515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 785 - 846
Target Start/End: Complemental strand, 32365206 - 32365144
Alignment:
Q  785 aaattgattttaagataata-attttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    ||||||||||||| |||||  |||||||| |||||||||||||  ||||||| ||||||||||    
T  32365206 aaattgattttaaaataattgattttagtcaaaagtgagttgaatgtaaattgatttatgttt 32365144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 805 - 846
Target Start/End: Original strand, 40415315 - 40415356
Alignment:
Q  805 attttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  40415315 attttagttaaaagtgagttggatgtaaattaatttatgttt 40415356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 805 - 846
Target Start/End: Original strand, 52931591 - 52931632
Alignment:
Q  805 attttagttaaaagtgagttgagagtaaattaatttatgttt 846  Q
    |||||||||||||||||||| || ||||||| ||||||||||    
T  52931591 attttagttaaaagtgagtttagtgtaaattgatttatgttt 52931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 812 - 888
Target Start/End: Complemental strand, 3853984 - 3853907
Alignment:
Q  812 ttaaaagtgagttgagagtaaattaatttatgttttgat-cattaatgtatatttgatttttatcaattcatgttgtt 888  Q
    |||||||||||||||  ||||||| |||||||||| ||| |||| ||||| | |||||| ||||||||  ||||||||    
T  3853984 ttaaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaattgattcttatcaatctatgttgtt 3853907  T

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