View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5515-Insertion-3 (Length: 697)

Name: NF5515-Insertion-3
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5515-Insertion-3
NF5515-Insertion-3
[»] chr1 (2 HSPs)
chr1 (38-697)||(36530116-36530775)
chr1 (552-604)||(21417782-21417834)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 38 - 697
Target Start/End: Original strand, 36530116 - 36530775
Alignment:
Q  38 aatctctgtatttatttctttattttatgctgttttagggttaatccaaaaggtataaaccaaaactgagtttttctcgatataaatctaggnnnnnnna 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  36530116 aatctctgtatttatttctttattttatgctgttttagggttaatccaaaaggtataaaccaaaactgagtttttctcgatataaatctaggttttttta 36530215  T
Q  138 ttcaatccaaatccatccatttttccaccctagaactaatttgattgttatgttgcggcattttctcgtgtgtgaatgaatcatgtctataccactgtgt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36530216 ttcaatccaaatccatccatttttccaccctagaactaatttgattgttatgttgcggcattttctcgtgtgtgaatgaatcatgtctataccactgtgt 36530315  T
Q  238 ttgtgatgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcattttagttaatgtctgctagtctag 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36530316 ttgtgatgttagcttttatgcttgtctatttatttagggttcgattatttagaaattgttgagaaattaatttcattttagttaatgtctgctagtctag 36530415  T
Q  338 aagttctgagattgattggattttattcaatggattgtattagattttactctt-aaatttcagcggattgtaaatggattgttttgatccattcattaa 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36530416 aagttctgagattgattggattttattcaatggattgtattagattttactcttaaaatttcagcggattgtaaatggattgttttgatccattcattaa 36530515  T
Q  437 caatccaatgcaaatctatcaaattaatccattttgccaccttagaactaatttatttgttgtgttgcggcattttcttgcgtgtgaatgaatcatgtct 536  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36530516 caatccaatgcaaatctatcaaattcatccattttgccaccttagaactaatttatttgttgtgttgcggcattttcttgtgtgtgaatgaatcatgtct 36530615  T
Q  537 acagca-ccgtgttcgtgttatcttttatgctagtaatacatgatatagtagtgaatactgactatagatgattgacacgacatttgtacatatgattgc 635  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||| |||||||    
T  36530616 acagcacccgtgttcgtgttatcttttatgctagtaatacatgatatagtagtgaatattgac--tagaggattgacacgacatttgtacatgtgattgc 36530713  T
Q  636 attcaagtatttccattgtcttaaattattaccggtgtttgtatcgtctagtttggtgtacg 697  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  36530714 attcaagtatttccattgtcttaaattattacttgtgtttgtatcgtctagttcggtgtacg 36530775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 552 - 604
Target Start/End: Original strand, 21417782 - 21417834
Alignment:
Q  552 tgttatcttttatgctagtaatacatgatatagtagtgaatactgactataga 604  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  21417782 tgttatctattatgctagtaatacatgatatagtagtgaatactgaccataga 21417834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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