View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5515-Insertion-4 (Length: 621)
Name: NF5515-Insertion-4
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5515-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 42 - 466
Target Start/End: Original strand, 6933408 - 6933829
Alignment:
| Q |
42 |
ctgatcttaagattttgtgggaagaactagaattgtatatgccaatacctacatgtacctgtcatcatgtcagttgctcttgtgaagctatgcgtactgc |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6933408 |
ctgatcttaagattttgtgggaagaactagaattgtatatgccaatacctacatgtacctgtcat---gtcagttgctcttgtgaagctatgcgtactgc |
6933504 |
T |
|
| Q |
142 |
tagatctaatcatagtttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatccttta |
241 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6933505 |
tagatctaatcataatttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatccttta |
6933604 |
T |
|
| Q |
242 |
cctagcttgaataaaattttctcaatggttattcagcatgagcgtcaaattgttcctcctatttcagttaataatggctctaaagtccttgttattcagt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
6933605 |
cctagcttgaataaaattttctcaatggttattcagcatgagcgtcaaattgttcctcctatttcagttaattatgactctaaagtccttgttattcagt |
6933704 |
T |
|
| Q |
342 |
atggagttccacctcatttgcagaagaaaagtttaaactatgcagctcataaggttaatgcagaaaattctgtgcctccaacccttactcatgagcagta |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
6933705 |
atggagttccacctcatttgcagaagaaaagtttaaactatgcagctcataaggttaatgcagaaaattctgcgcctccagcccttactcatgagcagta |
6933804 |
T |
|
| Q |
442 |
taatactcttgtgtctctacttcag |
466 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6933805 |
taatactcttgtgtctctacttcag |
6933829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 471 - 621
Target Start/End: Original strand, 6934030 - 6934180
Alignment:
| Q |
471 |
attgaagatgattggttctgctgaactcgttgaaggattgtattgtatcacttggttctcctagataagattatgagtgcatctgctgccccttgcaact |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934030 |
attgaagatgattggttctgctgaactcgttgaaggattgtattgtatcacttggttctcctagataagattatgagtgcatctgctgccccttgcaact |
6934129 |
T |
|
| Q |
571 |
ctgttgtcatcataccagaaaatgcattatggcattttagactaggccacc |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934130 |
ctgttgtcatcataccagaaaatgcattatggcattttagactaggccacc |
6934180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 42 - 335
Target Start/End: Complemental strand, 18435846 - 18435556
Alignment:
| Q |
42 |
ctgatcttaagattttgtgggaagaactagaattgtatatgccaatacctacatgtacctgtcatcatgtcagttgctcttgtgaagctatgcgtactgc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||| |
|
|
| T |
18435846 |
ctgatcttaagattttgtgggaagaactagaaatgtatatgccaatacctacatgtacctgtcgt---gtccgttgctcttgtgaagctatgcatactgc |
18435750 |
T |
|
| Q |
142 |
tagatctaatcatagtttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatccttta |
241 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18435749 |
tagatataatcataatttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatccttta |
18435650 |
T |
|
| Q |
242 |
cctagcttgaataaaattttctcaatggttattcagcatgagcgtcaaattgttcctcctatttcagttaataatggctctaaagtccttgtta |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
18435649 |
cctagcttgaataaaattttctcaatggttattcagcatgaacgtcaaattgttccacatgtttcagttaatgatgactctaaagtccttgtta |
18435556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 471 - 621
Target Start/End: Complemental strand, 18434879 - 18434734
Alignment:
| Q |
471 |
attgaagatgattggttctgctgaactcgttgaaggattgtattgtatcacttggttctcctagataagattatgagtgcatctgctgccccttgcaact |
570 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||| || || |||||||||||||||||||| |
|
|
| T |
18434879 |
attgaagacgattggttctgctgaactcattgaaggattgtat-----cacgtggttctaccagataagattcggaatgtatctgctgccccttgcaact |
18434785 |
T |
|
| Q |
571 |
ctgttgtcatcataccagaaaatgcattatggcattttagactaggccacc |
621 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18434784 |
ctgctgtcatcataccagaaaatgcattatggcattttagactaggccacc |
18434734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 342 - 466
Target Start/End: Complemental strand, 18435435 - 18435311
Alignment:
| Q |
342 |
atggagttccacctcatttgcagaagaaaagtttaaactatgcagctcataaggttaatgcagaaaattctgtgcctccaacccttactcatgagcagta |
441 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||| ||||| |||||| | ||||| ||||||||||| |
|
|
| T |
18435435 |
atggagtaccacctcatttacagaagaaaggttcaaactatgcagctcataatgttaatgcagaaagttctgcacctccagctcttacacatgagcagta |
18435336 |
T |
|
| Q |
442 |
taatactcttgtgtctctacttcag |
466 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18435335 |
taatactcttgtgtctctacttcag |
18435311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 42 - 335
Target Start/End: Original strand, 30152180 - 30152474
Alignment:
| Q |
42 |
ctgatcttaagattttgtgggaagaactagaattgtatatgccaatacctacatgtacctgtcatcatgtcagttgctcttgtgaagctatgcgtactgc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
30152180 |
ctgatcttaagattttgtgggaagaactagaaatgtatatgccaatacctacatgtacctgtcgt---gtccgttgctcttgtgaagctatgcgtactgt |
30152276 |
T |
|
| Q |
142 |
tagatctaatcatagtttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatccttta |
241 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30152277 |
tagatataatcataatttactctatgtgattcgttttttgactggtcttaatgaagaattcagcgctgttaagtcacaaattctgctattagatccttta |
30152376 |
T |
|
| Q |
242 |
cctagcttgaataaaattttctcaatggt----tattcagcatgagcgtcaaattgttcctcctatttcagttaataatggctctaaagtccttgtta |
335 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| | | ||||||||||| ||| ||||||||||||||||| |
|
|
| T |
30152377 |
cctagcttgaataaaattttctcagtggttatatattcagcatgaacgtcaaattgttccacatgtttcagttaatgatgactctaaagtccttgtta |
30152474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 471 - 621
Target Start/End: Original strand, 30153151 - 30153296
Alignment:
| Q |
471 |
attgaagatgattggttctgctgaactcgttgaaggattgtattgtatcacttggttctcctagataagattatgagtgcatctgctgccccttgcaact |
570 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| ||| ||||||| | |||||||||| || || || ||||||||||||||||| |
|
|
| T |
30153151 |
attgaagacgattggttctgctgaactcattgaaggattgtat-----cacgtggttctaccagataagattcggaatgtatatgctgccccttgcaact |
30153245 |
T |
|
| Q |
571 |
ctgttgtcatcataccagaaaatgcattatggcattttagactaggccacc |
621 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30153246 |
ctgctgtcatcataccagaaaatgcattatggcattttagactaggccacc |
30153296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 30152595 - 30152719
Alignment:
| Q |
342 |
atggagttccacctcatttgcagaagaaaagtttaaactatgcagctcataaggttaatgcagaaaattctgtgcctccaacccttactcatgagcagta |
441 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
30152595 |
atggagtaccacctcatttacagaagaaaggttcaaactatgcagctcataatgttaatgcagaaacttctgcacctccagcccttacacatgagcagta |
30152694 |
T |
|
| Q |
442 |
taatactcttgtgtctctacttcag |
466 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30152695 |
taatactcttgtgtctctacttcag |
30152719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 170 - 298
Target Start/End: Original strand, 31212265 - 31212392
Alignment:
| Q |
170 |
attcgttttttgactggtcttaatgaagaattcagcgttgttaagtcacaaattctgctattagatcctttacctagcttgaataaaattttctcaatgg |
269 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
31212265 |
attcgttttttgactgatcttgatgaa-aattcagtgttgttaaatcataaattctgctataagatcctttacctagcttgaataaaattttcccgatgg |
31212363 |
T |
|
| Q |
270 |
ttattcagcatgagcgtcaaattgttcct |
298 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |
|
|
| T |
31212364 |
ttattcaacatgaacgtcaaattgttcct |
31212392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 31205333 - 31205462
Alignment:
| Q |
42 |
ctgatcttaagattttgtgggaagaactagaattgtatatgccaatacctacatgtacctgtcatcatgtcagttgctcttgtgaagctatgcgtactgc |
141 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| |||||| ||||||||||||||||||||||| | ||| |||||||||||| |||||| ||||||| |
|
|
| T |
31205333 |
ctgatcttcagattttgtgg-aagaattagagatgtatacgccaatacctacatgtacctgtcgt---gtccattgctcttgtgatgctatgtgtactgc |
31205428 |
T |
|
| Q |
142 |
tagatctaatcatagtttactctatgtgattcgt |
175 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
31205429 |
tagatctaatcataatttactctatgtgattcgt |
31205462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University