View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5515-Insertion-5 (Length: 501)
Name: NF5515-Insertion-5
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5515-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 819536 - 820031
Alignment:
| Q |
10 |
ttggtggattcgtccatttttcatttctctctttcttctcagtctcgtacgtacttactgctactattgc----tctcatattattcaattattcnnnnn |
105 |
Q |
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| T |
819536 |
ttggtggattcgtccatttttcatttctctctttcttctcagtctcgtacgtacttactgctactattgcatgctctcatattattcaattattcttttt |
819635 |
T |
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| Q |
106 |
nnnnnnnnngttatatatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattatt |
205 |
Q |
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| T |
819636 |
tttttttttttttgttatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattatt |
819735 |
T |
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| Q |
206 |
actactagagtatttgtggtggtgttctctggattagttttaaagtaaaaattcattgtgtagatgactagttttaaaaatctgatttgatttaacttaa |
305 |
Q |
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| T |
819736 |
actactagagtatttgtggtggtgttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaa |
819835 |
T |
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| Q |
306 |
ttgtgcttatctttgttgaacttgtgtgtattttttggctatatcttctctgacacattttgtgttgggtagatagtccgctggtagtaatatatctcat |
405 |
Q |
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| T |
819836 |
ttgtgcttatctttgttgaacttgtgtgtattttttggctatatcttctctgacatattttgtgttaggtagatagtccgctggtagtaatatatctcat |
819935 |
T |
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| Q |
406 |
tttgatttctttnnnnnnntgtcgtttattagttgtgaaataatgttnnnnnnntaggtatattttgatgacttttctcaatatttaatgatgttc |
501 |
Q |
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| T |
819936 |
tttgatttctttaaaaaaatgtcgtttattagttgtgaaataatgttaaaaaaataggtatattttgatgacttttctcaatatttaatgatgttc |
820031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 34235724 - 34235784
Alignment:
| Q |
349 |
tcttctctgacacattttgtgttgggtagatagtccgctggtagtaatatatctcattttg |
409 |
Q |
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| T |
34235724 |
tcttctcagacacgtcttgtgctgggaaaatagtctgctggtagtaatatttctcattttg |
34235784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 416
Target Start/End: Complemental strand, 9277795 - 9277702
Alignment:
| Q |
322 |
tgaacttgtg-tgtattttttggctatatcttctctgacacattttgtgttgggtagatagtccgctggtagtaatatatctcattttgatttctt |
416 |
Q |
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| T |
9277795 |
tgaacttgtgatgtatcttttggctattt--tctccgacacatcttgtgctgagaagatagtctgctggtagtaatatattttattttgatttctt |
9277702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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