View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5515_high_2 (Length: 240)

Name: NF5515_high_2
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5515_high_2
NF5515_high_2
[»] chr3 (9 HSPs)
chr3 (1-150)||(37130547-37130704)
chr3 (1-60)||(37123997-37124056)
chr3 (181-223)||(25070870-25070912)
chr3 (182-223)||(26903063-26903104)
chr3 (182-223)||(36617936-36617977)
chr3 (183-223)||(26557645-26557685)
chr3 (183-223)||(28210880-28210920)
chr3 (183-223)||(52119127-52119167)
chr3 (183-220)||(2125769-2125806)
[»] chr6 (4 HSPs)
chr6 (183-223)||(16693608-16693648)
chr6 (181-223)||(5013726-5013768)
chr6 (182-223)||(18816825-18816866)
chr6 (182-223)||(595771-595812)
[»] chr5 (5 HSPs)
chr5 (183-220)||(9047488-9047525)
chr5 (184-220)||(423987-424023)
chr5 (182-220)||(18108361-18108399)
chr5 (184-221)||(17077002-17077039)
chr5 (181-222)||(13475552-13475593)
[»] chr1 (5 HSPs)
chr1 (186-223)||(18431242-18431279)
chr1 (183-223)||(22787424-22787464)
chr1 (184-223)||(11943666-11943705)
chr1 (181-220)||(6154068-6154107)
chr1 (181-223)||(5458618-5458660)
[»] scaffold0571 (1 HSPs)
scaffold0571 (183-223)||(121-161)
[»] chr8 (2 HSPs)
chr8 (183-223)||(45486354-45486394)
chr8 (183-220)||(11462730-11462767)
[»] chr7 (6 HSPs)
chr7 (183-223)||(38663365-38663405)
chr7 (181-220)||(39781160-39781199)
chr7 (183-220)||(43266096-43266133)
chr7 (186-223)||(46437785-46437822)
chr7 (181-221)||(42896847-42896887)
chr7 (183-223)||(36616865-36616905)
[»] chr4 (4 HSPs)
chr4 (187-220)||(8904430-8904463)
chr4 (190-223)||(45065888-45065921)
chr4 (181-221)||(2917615-2917655)
chr4 (182-222)||(47286603-47286643)
[»] chr2 (2 HSPs)
chr2 (186-223)||(16915978-16916015)
chr2 (12-41)||(39244790-39244819)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 37130704 - 37130547
Alignment:
Q  1 tgtttgaaaactaaattaactaactaaaaacacatttaaaatccaataccactaacaaaagg--------atagattttaatagatttaatacatttact 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| |||||| |||||||||||||||||||    
T  37130704 tgtttgaaaactaaattaactaactaaaaacacatttaaaatccaataccactaacaaaaggtactttaaataaattttagtagatttaatacatttact 37130605  T
Q  93 atatggtggcctcaaacatttataggnnnnnnntatataaaaacacggtggggcactt 150  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  37130604 atatggtggcctcaaacatttataggaaaaaaatatataaaaacacggtggggcactt 37130547  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37124056 - 37123997
Alignment:
Q  1 tgtttgaaaactaaattaactaactaaaaacacatttaaaatccaataccactaacaaaa 60  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  37124056 tgtttgaaaactaaattagctaactaaaaacacatttaagatccaataccactaaaaaaa 37123997  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 25070912 - 25070870
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  25070912 atcaggggcggatctagacattgcatattagtgtggcaaaatt 25070870  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 26903063 - 26903104
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  26903063 tcaggggcggatctagacattgcatattagtgtggcaaaatt 26903104  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 36617977 - 36617936
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  36617977 tcaggggcggatctagacattgcatattagtgtggcaaaatt 36617936  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 26557685 - 26557645
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  26557685 caggggcggatctagacatgtcatattagtgtggcaaaatt 26557645  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 28210880 - 28210920
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  28210880 caggggcggatctagacattgcatattagtgtggcaaaatt 28210920  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 52119167 - 52119127
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  52119167 caggggcggatctagacatgtcatattagtgtggcaaaatt 52119127  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 2125806 - 2125769
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2125806 caggggcggatctagacattgcatattagtgtggcaaa 2125769  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 16693648 - 16693608
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16693648 caggggcggatctagacatttcatattagtgtggcaaaatt 16693608  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 5013726 - 5013768
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  5013726 atcagggacggatctagacatttcatattagtgtggcaaaatt 5013768  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 18816825 - 18816866
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  18816825 tcaggggcggatctagacattgcatattagtgtggcaaaatt 18816866  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 595812 - 595771
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  595812 tcaggggtggatctagacatttgatattagtgtggcaaaatt 595771  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 9047488 - 9047525
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9047488 caggggcggatctagacatttcatattagtgtggcaaa 9047525  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 423987 - 424023
Alignment:
Q  184 aggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||||||||||||||||||||||||||||||||    
T  423987 aggggcggatctagacatttcatattagtgtggcaaa 424023  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 18108361 - 18108399
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  18108361 tcaggggcggatctagacattttatattagtgtggcaaa 18108399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 17077039 - 17077002
Alignment:
Q  184 aggggcggatctagacatttcatattagtgtggcaaaa 221  Q
    |||||||||||||||||||||||||||||||| |||||    
T  17077039 aggggcggatctagacatttcatattagtgtgacaaaa 17077002  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 13475552 - 13475593
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaat 222  Q
    |||||||||||||| |||||||| ||||| ||||||||||||    
T  13475552 atcaggggcggatccagacatttgatattggtgtggcaaaat 13475593  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 18431242 - 18431279
Alignment:
Q  186 gggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18431242 gggcggatctagacatttcatattagtgtggcaaaatt 18431279  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 22787424 - 22787464
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  22787424 caggggcggatctagacatgtcatattagtgtggcaaaatt 22787464  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 11943666 - 11943705
Alignment:
Q  184 aggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  11943666 aggggcggatctagacatttgatattagtgtggcaaaatt 11943705  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 6154068 - 6154107
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  6154068 atcatgggtggatctagacatttcatattagtgtggcaaa 6154107  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 5458618 - 5458660
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||    
T  5458618 atcaggggcggatgtagacatttgatattggtgtggcaaaatt 5458660  T

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Target: scaffold0571 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 161 - 121
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  161 caggggtggatctagacatttcatattagtgtggcaaaatt 121  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 45486394 - 45486354
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45486394 caggggcggatctagacattgcatattagtgtggcaaaatt 45486354  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 11462730 - 11462767
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||| |||||||||||||||||||||||||||||    
T  11462730 caggggcgaatctagacatttcatattagtgtggcaaa 11462767  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 38663405 - 38663365
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  38663405 caggggcggatctagacattgcatattagtgtggcaaaatt 38663365  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 39781199 - 39781160
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39781199 atcaggggcggatctagacattgcatattagtgtggcaaa 39781160  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 43266133 - 43266096
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaa 220  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43266133 caggggcggatctagacattgcatattagtgtggcaaa 43266096  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 46437822 - 46437785
Alignment:
Q  186 gggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||||||||||||| |||||||||||||||||||    
T  46437822 gggcggatctagacattttatattagtgtggcaaaatt 46437785  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 42896847 - 42896887
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaa 221  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  42896847 atcaggggcggatctagacatttgatattggtgtggcaaaa 42896887  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 36616865 - 36616905
Alignment:
Q  183 caggggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||| ||||| |||||| ||||||    
T  36616865 caggggcggatctagacatttgatattggtgtggtaaaatt 36616905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 8904463 - 8904430
Alignment:
Q  187 ggcggatctagacatttcatattagtgtggcaaa 220  Q
    ||||||||||||||||||||||||||||||||||    
T  8904463 ggcggatctagacatttcatattagtgtggcaaa 8904430  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 45065888 - 45065921
Alignment:
Q  190 ggatctagacatttcatattagtgtggcaaaatt 223  Q
    ||||||||||||||||||||||||||||||||||    
T  45065888 ggatctagacatttcatattagtgtggcaaaatt 45065921  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 2917615 - 2917655
Alignment:
Q  181 atcaggggcggatctagacatttcatattagtgtggcaaaa 221  Q
    |||| |||||||||||||||||| ||||| |||||||||||    
T  2917615 atcatgggcggatctagacatttgatattggtgtggcaaaa 2917655  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 47286603 - 47286643
Alignment:
Q  182 tcaggggcggatctagacatttcatattagtgtggcaaaat 222  Q
    ||||||||||||| |||||||| ||||| ||||||||||||    
T  47286603 tcaggggcggatccagacatttgatattggtgtggcaaaat 47286643  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 16915978 - 16916015
Alignment:
Q  186 gggcggatctagacatttcatattagtgtggcaaaatt 223  Q
    |||||||| |||||||||||||||||||||||||||||    
T  16915978 gggcggatttagacatttcatattagtgtggcaaaatt 16916015  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 39244819 - 39244790
Alignment:
Q  12 taaattaactaactaaaaacacatttaaaa 41  Q
    ||||||||||||||||||||||||||||||    
T  39244819 taaattaactaactaaaaacacatttaaaa 39244790  T

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