View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5515_low_1 (Length: 285)
Name: NF5515_low_1
Description: NF5515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5515_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 37130687 - 37130967
Alignment:
| Q |
1 |
taatttagttttcaaacaagttttttgtttgt-caatttagtccataaaataattnnnnnnnnn-cacattaggaaatgtgtttgtaattttaatacaat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
37130687 |
taatttagttttcaaacaagttttttgtttgttcaatttagtctataaaataattaacaaaaaaacacattaggagatgtgtttgtaattttaatacatt |
37130786 |
T |
|
| Q |
99 |
caaaagattataacgacatcacgtgacatagtcttatctgctatgaatatatcttgtatatggcttttatattgaaaatgagaaaatctttcaatatttt |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37130787 |
caaaagattataacgacatcacatgacatagtcttatctgctatgaatatatcttctctgtagtttttatattgaaaatgagaaaatctttcaatatttt |
37130886 |
T |
|
| Q |
199 |
tgtcactacataatgtactctttatgcttatttccttatgtatccctctgttttcattctttagtatacatattgatgatg |
279 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37130887 |
tgtcactacataatgcactctttatgcttatttccttatgtatccctctgttttcattctttagtatacatattgttgatg |
37130967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 37124375 - 37124438
Alignment:
| Q |
163 |
ttttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgtactctttatgct |
226 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
37124375 |
ttttatattgaaattgaaaaaatctttcaatattttggtcgctacatagtgtactctttatgct |
37124438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37124039 - 37124092
Alignment:
| Q |
1 |
taatttagttttcaaacaagttttttgtttgtcaatttagtccataaaataatt |
54 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
37124039 |
taatttagttttcaaacaagtttttcgtttgtgaatttagtccgtaaaataatt |
37124092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University