View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5516-Insertion-1 (Length: 1076)
Name: NF5516-Insertion-1
Description: NF5516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5516-Insertion-1 |
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| [»] scaffold1384 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 765; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 11 - 870
Target Start/End: Complemental strand, 52806833 - 52805987
Alignment:
| Q |
11 |
attgctgcattgaaaagagcacaagctcatcaaagacgaggttccatagaacagcagcagcaacaacagcaaactgttcttactgtcaaagttgagcttg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52806833 |
attgctgcattgaaaagagcacaagctcatcaaagacgaggttccatagaacagcagcagcaacaccagcaaactgttcttactgtcaaagttgagcttg |
52806734 |
T |
|
| Q |
111 |
aacagcttattatatctatacttgatgatcctagtgttagtagggttacgagagaagctggattctctagtactcttgttaagaacaatttagaagactc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806733 |
aacagcttattatatctatacttgatgatcctagtgttagtagggttatgagagaagctggattctctagtactcttgttaagaacaatttagaagactc |
52806634 |
T |
|
| Q |
211 |
tttctcaccttctaattctgtttttaaatgttataatagttctggtggtggtgtgttttcatctccatgttcgccttcaactagtgagaatcatagagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806633 |
tttctcaccttctaattctgtttttaaatgttataatagttctggtggtggtgtgttttcatctccatgttcgccttcaactagtgagaatcatagagaa |
52806534 |
T |
|
| Q |
311 |
aacattaaccttagcagtttcagacagaacaatttcatggctgctactagtgttaagcacagttcttctgagtttaactcagttctcttttctccaccaa |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806533 |
aacattaaccttagcagtttcagacagaacaatttcatggctgctactagtgctaagcacagttcttctgagtttaactcagttctcttttctccaccaa |
52806434 |
T |
|
| Q |
411 |
aaagaaccgagttgatgagtacatcaggtggacttggcttgacccttcattcttccaggtgatattttgcttaatcaataacaataatatactaagtaca |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52806433 |
aaagaaccgagttgatgagtacatcaggtggacttggcttgacccttcattcttccaggtgatattttgcttaatcaataacaata--atactaagtaca |
52806336 |
T |
|
| Q |
511 |
tgtttggattcacagtgagttagacagaaccaaagttatttgtgtatccaaacatgcactaaccttttagtaacataacatgtgttcttaattttgtttg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806335 |
tgtttggattcacagtgagttagacagaaccaaagttatttgtgtatccaaacatgcactaaccttttagtaacataacatgtgttcttaattttgtttg |
52806236 |
T |
|
| Q |
611 |
atttaagatataaaaggtttcataatgacatattaaatgcaaccaaaaaagaaaggtaaacataagtacataaaactaaaagtgttgtctagttctgatg |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806235 |
atttaagatataaaaggtttcataatgacatattaaatgcaaccaaaaaagaaaggtaaacataagtacataaaactaaaagtgttgtctagttctgatg |
52806136 |
T |
|
| Q |
711 |
gtgtttttgaaaggtgattaatttgttgtgcaatttgttgaggattatgtacggttactgagctatggcagaacacatgctaaaagcattgttggttggt |
810 |
Q |
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| T |
52806135 |
gtgtttttgaaaggtgatt------------aatttgttgaggattatgtacggttactgagctatggcagaacacatgctaaaagcattgttggttggt |
52806048 |
T |
|
| Q |
811 |
agtaaggc-aatatatgaagaagagtcnnnnnnnnctgcttcactttagtttgtcagtata |
870 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52806047 |
agtaaggcaaatatatgaagaagagtctttcttttctgcttcactttagtttgtcagtata |
52805987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 53818169 - 53818251
Alignment:
| Q |
87 |
ttcttactgtcaaagttgagcttgaacagcttattatatctatacttgatgatcctagtgttagtagggttacgagagaagct |
169 |
Q |
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||||| ||||||||||||| | ||||| || || ||||| || |||||||||||||||||||||||||| | |||||||||| |
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| T |
53818169 |
ttcttgctgtcaaagttgaattggaacaactcatcatatcaattcttgatgatcctagtgttagtagggtcatgagagaagct |
53818251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1002 - 1031
Target Start/End: Complemental strand, 52805971 - 52805942
Alignment:
| Q |
1002 |
tttctgagtagtatgtatgtttaaaactca |
1031 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
52805971 |
tttctgagtagtatgtatgtttaaaactca |
52805942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 40588613 - 40588529
Alignment:
| Q |
108 |
ttgaacagcttattatatctatacttgatgatcctagtgttagtagggttacgagagaagctggattctctagtactcttgttaa |
192 |
Q |
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| T |
40588613 |
ttgaacagctcataatctctatacttgatgatccaagtgttagtagagttatgagagaagctggtttctctagcactcttgttaa |
40588529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 25118305 - 25118339
Alignment:
| Q |
134 |
gatgatcctagtgttagtagggttacgagagaagc |
168 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
25118305 |
gatgatcctagtgttagtagggttatgagagaagc |
25118339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 16611444 - 16611558
Alignment:
| Q |
98 |
aaagttgagcttgaacagcttattatatctatacttgatgatcctagtgttagtagggttacgagagaagctggattctctagtactcttgttaagaaca |
197 |
Q |
| |
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|||||||| ||||| ||||||||| | || || |||||||| ||| ||||||||| |||| |||||||||||| || |||||| || |||||| |||| |
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| T |
16611444 |
aaagttgaacttgatcagcttattctttccattcttgatgacccttctgttagtagagttatgagagaagctggtttttctagtccttctgttaaaaaca |
16611543 |
T |
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| Q |
198 |
atttagaagactctt |
212 |
Q |
| |
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|||| ||| |||||| |
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| T |
16611544 |
atttggaaaactctt |
16611558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 766 - 682
Alignment:
| Q |
108 |
ttgaacagcttattatatctatacttgatgatcctagtgttagtagggttacgagagaagctggattctctagtactcttgttaa |
192 |
Q |
| |
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||||||| || || |||||||| | |||||| ||| || ||||||| |||| |||||||||||| |||||| |||| |||||||| |
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| T |
766 |
ttgaacaactaataatatctattcctgatgacccttgtattagtagagttatgagagaagctggtttctctggtacacttgttaa |
682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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