View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5516-Insertion-2 (Length: 707)
Name: NF5516-Insertion-2
Description: NF5516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5516-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 10 - 694
Target Start/End: Original strand, 819536 - 820225
Alignment:
| Q |
10 |
ttggtggattcgtccatttttcatttctctctttcttctcagtctcgtacgtacttactgctactattgc----tctcatattattcaattattcnnnnn |
105 |
Q |
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| T |
819536 |
ttggtggattcgtccatttttcatttctctctttcttctcagtctcgtacgtacttactgctactattgcatgctctcatattattcaattattcttttt |
819635 |
T |
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| Q |
106 |
nnnnnnnnngtta--tatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattatt |
203 |
Q |
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| T |
819636 |
tttttttttttttgttatatattaagattcaataatcaccaccaccttgtttctctctactagcaaattgtttgttttgttccaaatccattttattatt |
819735 |
T |
|
| Q |
204 |
actactagagtatttgtggtggtgttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaa |
303 |
Q |
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| T |
819736 |
actactagagtatttgtggtggtgttctctggattagttttaaagtaaaaattcattgtttagatgactagttttaaaaatctgatttgatttaacttaa |
819835 |
T |
|
| Q |
304 |
ttgtgcttatctttgttgaacttgtgtgcattttttggctatatcttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcat |
403 |
Q |
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| T |
819836 |
ttgtgcttatctttgttgaacttgtgtgtattttttggctatatcttctctgacatattttgtgttaggtagatagtccgctggtagtaatatatctcat |
819935 |
T |
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| Q |
404 |
tttgatttctttnnnnnnntgtcgtttattagttgtgaaataatgttnnnnnnntaggtatattttgatgacttttctcaatatttaatgatgttcttta |
503 |
Q |
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| T |
819936 |
tttgatttctttaaaaaaatgtcgtttattagttgtgaaataatgttaaaaaaataggtatattttgatgacttttctcaatatttaatgatgttcttta |
820035 |
T |
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| Q |
504 |
tttctctcttacccnnnnnnnnnctctcaccagtaatcaagaaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagtagca |
603 |
Q |
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| T |
820036 |
tttctctcttacccttttttttt-tctcaccagtaatcaagaaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagaagca |
820134 |
T |
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| Q |
604 |
ttcaacccaaatcaagagtatgttccatgatactttccataccctacaacatgtagttttattttcttctaatgcatgttatttttcacaa |
694 |
Q |
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| T |
820135 |
ttcaacccaaatcaagagtatgttccatgatactttccataccctacaacatgtagttttattttcttctaatgaatgttatttttcacaa |
820225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 572 - 648
Target Start/End: Original strand, 810998 - 811074
Alignment:
| Q |
572 |
tctcgattgaagaaggtttggaagaagtagcattcaacccaaatcaagagtatgttccatgatactttccataccct |
648 |
Q |
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| T |
810998 |
tctccattgaagaaggtttggttcaagttgcattcaactcaaaacaagagtatgttccatgacacttttcataccct |
811074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 640
Target Start/End: Original strand, 840236 - 840331
Alignment:
| Q |
545 |
aaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagtagcattcaacccaaatcaagagtatgttccatgatactttc |
640 |
Q |
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| T |
840236 |
aaaatgaagtggctgcaaatgctcttttctcgattgaagaagtttttgtcgaagaagcattcaactaaaaataagagtatgttccatgatactttc |
840331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 9277767 - 9277702
Alignment:
| Q |
349 |
ttctctgacacattttgtgttaggtagatagtccgctggtagtaatatatctcattttgatttctt |
414 |
Q |
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| T |
9277767 |
ttctccgacacatcttgtgctgagaagatagtctgctggtagtaatatattttattttgatttctt |
9277702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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