View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5516-Insertion-7 (Length: 128)

Name: NF5516-Insertion-7
Description: NF5516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5516-Insertion-7
NF5516-Insertion-7
[»] chr8 (17 HSPs)
chr8 (6-123)||(172468-172585)
chr8 (6-123)||(7924980-7925097)
chr8 (6-123)||(8300397-8300514)
chr8 (6-123)||(41664797-41664914)
chr8 (6-123)||(32267148-32267265)
chr8 (10-123)||(9923199-9923312)
chr8 (42-120)||(20824929-20825007)
chr8 (42-120)||(37434391-37434469)
chr8 (43-123)||(24794377-24794457)
chr8 (42-120)||(17700110-17700188)
chr8 (43-122)||(11393778-11393857)
chr8 (48-122)||(43249235-43249308)
chr8 (29-120)||(42176987-42177078)
chr8 (42-119)||(18187776-18187853)
chr8 (42-122)||(23942717-23942797)
chr8 (43-122)||(16048346-16048425)
chr8 (43-122)||(25320442-25320521)
[»] chr4 (16 HSPs)
chr4 (6-123)||(23647678-23647795)
chr4 (6-123)||(23642020-23642137)
chr4 (6-123)||(47419398-47419515)
chr4 (6-123)||(19755861-19755978)
chr4 (6-123)||(19783828-19783945)
chr4 (6-123)||(1827969-1828086)
chr4 (6-123)||(15740814-15740931)
chr4 (42-120)||(55725138-55725216)
chr4 (43-123)||(42952934-42953014)
chr4 (21-123)||(46146286-46146388)
chr4 (6-120)||(5789524-5789638)
chr4 (21-123)||(19733410-19733512)
chr4 (32-122)||(19115056-19115146)
chr4 (70-122)||(25136062-25136114)
chr4 (55-122)||(43516178-43516245)
chr4 (69-120)||(48312751-48312802)
[»] scaffold0034 (1 HSPs)
scaffold0034 (6-123)||(105272-105389)
[»] chr7 (16 HSPs)
chr7 (6-123)||(4937557-4937674)
chr7 (6-123)||(11276677-11276794)
chr7 (6-123)||(29968568-29968685)
chr7 (6-123)||(234867-234984)
chr7 (10-123)||(17721233-17721346)
chr7 (10-96)||(47877580-47877666)
chr7 (43-122)||(13553614-13553693)
chr7 (36-122)||(36364140-36364226)
chr7 (36-122)||(39931026-39931112)
chr7 (29-115)||(31423219-31423305)
chr7 (42-91)||(23811618-23811667)
chr7 (79-122)||(9978725-9978768)
chr7 (48-122)||(32815745-32815819)
chr7 (46-122)||(9895532-9895608)
chr7 (47-107)||(45844795-45844855)
chr7 (55-90)||(9414100-9414135)
[»] chr3 (20 HSPs)
chr3 (6-123)||(2364871-2364988)
chr3 (6-123)||(10323000-10323117)
chr3 (6-123)||(19919658-19919775)
chr3 (6-123)||(34332244-34332361)
chr3 (6-123)||(16179541-16179658)
chr3 (6-123)||(962592-962709)
chr3 (6-123)||(3141445-3141562)
chr3 (42-122)||(38774902-38774982)
chr3 (42-120)||(12341687-12341765)
chr3 (43-122)||(14863895-14863974)
chr3 (43-122)||(21739953-21740032)
chr3 (21-120)||(48569471-48569570)
chr3 (43-122)||(10868234-10868313)
chr3 (21-96)||(17077754-17077829)
chr3 (43-122)||(1231654-1231733)
chr3 (66-120)||(19891331-19891385)
chr3 (55-120)||(48930369-48930434)
chr3 (70-122)||(23604021-23604073)
chr3 (88-123)||(20531482-20531517)
chr3 (55-122)||(31675574-31675641)
[»] chr5 (15 HSPs)
chr5 (6-123)||(27116602-27116719)
chr5 (6-123)||(42514314-42514431)
chr5 (6-123)||(30731743-30731860)
chr5 (6-123)||(23238977-23239094)
chr5 (10-123)||(35983220-35983333)
chr5 (10-123)||(28535105-28535217)
chr5 (6-123)||(33170252-33170369)
chr5 (10-96)||(31642109-31642195)
chr5 (42-120)||(8299614-8299692)
chr5 (42-120)||(10780831-10780909)
chr5 (42-120)||(25856871-25856949)
chr5 (65-123)||(42928784-42928842)
chr5 (48-113)||(19338388-19338453)
chr5 (42-123)||(27165394-27165475)
chr5 (79-122)||(35122136-35122179)
[»] chr1 (8 HSPs)
chr1 (6-123)||(35541628-35541745)
chr1 (6-123)||(6051197-6051314)
chr1 (50-122)||(49264394-49264466)
chr1 (43-122)||(20796288-20796367)
chr1 (43-122)||(39430908-39430987)
chr1 (43-122)||(13112718-13112797)
chr1 (55-114)||(45270884-45270943)
chr1 (55-122)||(45795918-45795985)
[»] scaffold0472 (1 HSPs)
scaffold0472 (6-123)||(3846-3963)
[»] chr6 (13 HSPs)
chr6 (6-123)||(2554200-2554317)
chr6 (10-123)||(24766843-24766956)
chr6 (42-120)||(20882465-20882543)
chr6 (42-120)||(17605766-17605844)
chr6 (65-120)||(21629554-21629609)
chr6 (42-120)||(10576682-10576760)
chr6 (6-123)||(13938313-13938429)
chr6 (42-120)||(31292494-31292571)
chr6 (43-114)||(13086170-13086241)
chr6 (42-120)||(17577148-17577228)
chr6 (42-123)||(18682003-18682084)
chr6 (67-115)||(17228646-17228694)
chr6 (43-107)||(32197828-32197892)
[»] scaffold1350 (1 HSPs)
scaffold1350 (42-120)||(174-252)
[»] chr2 (10 HSPs)
chr2 (43-122)||(9668436-9668515)
chr2 (42-120)||(12646151-12646229)
chr2 (42-120)||(14440374-14440452)
chr2 (50-122)||(11233920-11233992)
chr2 (42-115)||(20004589-20004662)
chr2 (45-122)||(33583857-33583934)
chr2 (42-120)||(35488467-35488545)
chr2 (65-110)||(37445747-37445792)
chr2 (10-122)||(28253318-28253430)
chr2 (55-110)||(37437633-37437688)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 7e-56; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 172585 - 172468
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  172585 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttacccaacaaagcaatgttaaactccctcaacctcttaaacccc 172486  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  172485 aaccctccatactccttc 172468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 7924980 - 7925097
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7924980 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 7925079  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  7925080 aaccctccatactccttc 7925097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 8300397 - 8300514
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8300397 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 8300496  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  8300497 aaccctccatactccttc 8300514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 41664914 - 41664797
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| |||||||| || ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  41664914 cactaacaccttcctccacaaagcctccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaaccccc 41664815  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  41664814 aaccctccatactccttc 41664797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 32267148 - 32267265
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||| ||||| ||| ||||||||    
T  32267148 cactaacacctttctccacaaagcttccctctccaataacaaccgccaacaccatttacccaacaaagctatgttaaactctctcaatctcgtaaccccc 32267247  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  32267248 aaccctccatactccttc 32267265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 9923199 - 9923312
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||||| |  |||||||| ||||||||| ||||||||||||    
T  9923199 aacacctttctccacaaagcttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactctctcaacctcgtaacccccaacc 9923298  T
Q  110 ctccatactccttc 123  Q
    ||||||||||||||    
T  9923299 ctccatactccttc 9923312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 20824929 - 20825007
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  20824929 taacagcctccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 20825007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 37434469 - 37434391
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  37434469 taacagccgccaacaccattttcccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 37434391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 24794377 - 24794457
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttc 123  Q
    |||| |||||| ||||||||| | ||||||||||  |||||||||||||| ||| ||||||||||||||||| ||||||||    
T  24794377 aacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatctcctaacccccaaccctccagactccttc 24794457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 17700110 - 17700188
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||||||||||||||||| ||||||||| | || ||||||||||||||||||    
T  17700110 taacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 17700188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 11393857 - 11393778
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||||||| ||||||||| | ||||| ||||  |||||||||||||| | | ||||||||||||||||| |||||||    
T  11393857 aacaacctccaacaccatttacctaacaatgcaaaattaaactccctcaatcacctaacccccaaccctccagactcctt 11393778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 43249308 - 43249235
Alignment:
Q  48 cctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||||| ||||||||| | ||||||||||  |||||||| ||||||||| ||||||| ||||||||| |||||||    
T  43249308 cctccaacaccatttacctaacaaagcaaaattaaactctctcaacctcctaacccc-aaccctccagactcctt 43249235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 42177078 - 42176987
Alignment:
Q  29 catccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||||| || | ||||||||  || || ||||| |||||||||| |||||||||||| ||||||| | |||| | || |||||||||||||    
T  42177078 catccctatcaactaacaaccgtcaacatcatttctccaacaaaggaatgttaaactctctcaaccccctaacactcatccctccatactcc 42176987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 18187776 - 18187853
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactc 119  Q
    |||||| ||||| ||||||||| | ||||||||| ||||||||||||||     | ||||||||||||||||| ||||    
T  18187776 taacaatctccaacaccatttacctaacaaagcagtgttaaactccctcgtatgcctaacccccaaccctccagactc 18187853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 23942717 - 23942797
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||||||||||| ||||||||| | |  |||||||  ||||||||| ||||| || | |||||||| ||||||| ||||||    
T  23942717 taacaacctccaacaccatttacctagtaaagcaacattaaactccttcaacttcctgacccccaaacctccatgctcctt 23942797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 16048425 - 16048346
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||| | || | ||| |||||||||||||||| |  | ||  |||||||||||||||||||||    
T  16048425 aacatcctccaacaccatttacctaaaagagccatgttaaactccctcatctgcctagtccccaaccctccatactcctt 16048346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 25320442 - 25320521
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||  ||||||||| ||  |||||||| || |||| | ||||||||||||| |||| ||||||    
T  25320442 aacatcctccaacaccattttcccaacaaagaaaaattaaactctcttaaccgcctaacccccaaccccccatcctcctt 25320521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 7e-56; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 23647795 - 23647678
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23647795 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 23647696  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  23647695 aaccctccatactccttc 23647678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 23642137 - 23642020
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23642137 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 23642038  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  23642037 aaccctccatactccttc 23642020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 47419398 - 47419515
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||| |||||||    
T  47419398 cactaacacctttctccacaaagcatccctctccaacaacaacctccaacaccatttacctaacaaagcaatgttaaactccctcagcctctgaaccccc 47419497  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||| ||||||||    
T  47419498 aaccctccaaactccttc 47419515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 19755861 - 19755978
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| |||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||  |||| |||    
T  19755861 cactaacaccttcctccacaaagcttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacaccc 19755960  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  19755961 aaccctccatactccttc 19755978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 19783945 - 19783828
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| |||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||  |||| |||    
T  19783945 cactaacaccttcctccacaaagcttccctctccaataacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacaccc 19783846  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  19783845 aaccctccatactccttc 19783828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 1828086 - 1827969
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  1828086 cactaacaccttcctccacaaaacatccttctccaataacaaccgccaacaccatttatccaacaaagaaatgttaaactctctcaacctcgtaaccccc 1827987  T
Q  106 aaccctccatactccttc 123  Q
    |  |||||||||||||||    
T  1827986 agtcctccatactccttc 1827969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 15740814 - 15740931
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||||||||||||  | ||| |||||||||||||||   | ||||||||| ||||||||||||||||||||||  |||||||| | ||||||    
T  15740814 cactaacacctttctccacaaaacttccttctccaataacaaccgtaaacaccatttacccaacaaagcaatgttaaactctgtcaacctcgttaccccc 15740913  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  15740914 aaccctccatactccttc 15740931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 55725216 - 55725138
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||| ||||||||  | |||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||    
T  55725216 taacaacctccaacaccatttccctaacaaagcaaagttaaactctctcaacctcctaacacccaaccctccatactcc 55725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 42953014 - 42952934
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttc 123  Q
    |||| |||||| ||||||||| | ||||||||||  |||||||||||||| ||| ||||||||||||||||| ||||||||    
T  42953014 aacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatctcctaacccccaaccctccagactccttc 42952934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 46146286 - 46146388
Alignment:
Q  21 ccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||||| |||| ||||| | ||||||||| || ||||||||  | |||||||||||||||||| ||||||| ||| |||| |||| |||||| ||||||    
T  46146286 ccacaacccatctctctctactaacaaccttcaacaccattttcctaacaaagcaatgttaaaccccctcaatctcctaacacccatccctccgtactcc 46146385  T
Q  121 ttc 123  Q
    |||    
T  46146386 ttc 46146388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 5789638 - 5789524
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| | ||||||| | || ||||| | |||||||||||| ||||| ||  |||||||||  |  |||||||||||||||||| || | |||    
T  5789638 cactaacaccttacgccacaacccttcactctctactaacaacctccaacaccactttcccaacaaagtgacattaaactccctcaacctcctatctccc 5789539  T
Q  106 aaccctccatactcc 120  Q
    |||||| ||||||||    
T  5789538 aacccttcatactcc 5789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 19733512 - 19733410
Alignment:
Q  21 ccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||||| |||| ||||| | |||||||||||| ||||||||  | |||||| || |||||||||||||||| ||| |||| |||| |||| | ||||||    
T  19733512 ccacaacccatctctctctattaacaacctccaacaccattttcctaacaaaacagtgttaaactccctcaatctcctaacacccatcccttcgtactcc 19733413  T
Q  121 ttc 123  Q
    |||    
T  19733412 ttc 19733410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 19115056 - 19115146
Alignment:
Q  32 ccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||| |||||||||||| ||||||||  | || |||||||| ||||||||| |||||    ||||||| ||||||||| |||||||    
T  19115056 ccctatccactaacaacctccaacaccatttccctaataaagcaatattaaactccttcaactgtctaacccctaaccctccaaactcctt 19115146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 25136062 - 25136114
Alignment:
Q  70 aaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| ||| |||||||||||||||||||| || ||||| ||||||| ||||||    
T  25136062 aaagaaatattaaactccctcaacctcttcacacccaaacctccattctcctt 25136114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 43516245 - 43516178
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||||| | ||||||||| | ||||| |||  |||| || | |||||||||||||||||||||||    
T  43516245 caccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatactcctt 43516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 48312751 - 48312802
Alignment:
Q  69 caaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||||||||| ||||| |||  ||| |||||||| |||||||||    
T  48312751 caaagcaatgttaaactctctcaatctccgaacacccaaccccccatactcc 48312802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 105389 - 105272
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  105389 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 105290  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  105289 aaccctccatactccttc 105272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 2e-53; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 4937674 - 4937557
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4937674 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 4937575  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  4937574 aaccctccatactccttc 4937557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 11276794 - 11276677
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  11276794 cactaacacctttctccacaaagcttccctctccaataacaaccgccaacaccatttacccaccaaagcaatgttaaactccctcaacctcgtaaccccc 11276695  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  11276694 aaccctccatactccttc 11276677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 29968568 - 29968685
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||| ||| ||||||||    
T  29968568 cactaacacctttctccacaaagcttccctctccaataacaaccgccaacaccatttacccaacaaagcaatattaaactccctcaatctcgtaaccccc 29968667  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  29968668 aaccctccatactccttc 29968685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 234984 - 234867
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||||| |||||| || || |||||||||||||||| ||| ||||||||| ||||||||||||| |||||||| | ||||||| |||| |||    
T  234984 cactaacacctttcgccacaaagcttctctctccaataacaaccaccaacaccatttacccaacaaagcaatattaaactctcgcaacctcgtaactccc 234885  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  234884 aaccctccatactccttc 234867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 17721233 - 17721346
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||| ||||||||| |||||||||| |  |||||||| ||||||||| ||||||||||||    
T  17721233 aacacctttctccacaaagcttccttctccaataacaaccgccaacaccatttacccaacaaagctaaattaaactctctcaacctcgtaacccccaacc 17721332  T
Q  110 ctccatactccttc 123  Q
    ||||||||||||||    
T  17721333 ctccatactccttc 17721346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 47877580 - 47877666
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctc 96  Q
    ||||||| || |||||| || ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||    
T  47877580 aacacctgtcgccacaaagcttccctctccaataacaaccgccaacaccatttatccaacaaagcaatattaaactctctcaacctc 47877666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 13553693 - 13553614
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||| ||| |||||||    
T  13553693 aacatcctccaacaccatttatctaacaaagcaaaattaaactccctcaacctcctaacccccaaccccccagactcctt 13553614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 36364140 - 36364226
Alignment:
Q  36 ctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||| |||||| | ||| |||||||||  |||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||    
T  36364140 ctccactaacaaacgccaacaccatttactcaacaaagcaatattaaactccctcaatctcctaacccccaacccaccatactcctt 36364226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 39931112 - 39931026
Alignment:
Q  36 ctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||| |||||| | ||| ||||||||| | |||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  39931112 ctccactaacaaacgccaacaccatttacctaacagagcaatattaagctccctcaacctcctaacccccaaccctccatactcctt 39931026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 31423219 - 31423305
Alignment:
Q  29 catccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccat 115  Q
    ||||||| || | |||||||| ||| ||||||||  ||||||||||| |||||||||| ||||||||| |||| |||| ||||||||    
T  31423219 catccctatcaactaacaaccgccaacaccatttccccaacaaagcactgttaaactctctcaacctcctaacacccatccctccat 31423305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 23811618 - 23811667
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctca 91  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  23811618 taacaacctccagcaccatttatctaacaaagaaatgttaaactctctca 23811667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 9978768 - 9978725
Alignment:
Q  79 ttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  9978768 ttaaactccctcaacctcataacgcccaacccaccatactcctt 9978725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 32815819 - 32815745
Alignment:
Q  48 cctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||||| |||||||| || || | |||||| ||||||||||||| ||  |||||||||||||| ||| |||||||    
T  32815819 cctccaacaccatttttctaaaagagcaatattaaactccctcatccggttaacccccaacccaccaaactcctt 32815745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 9895532 - 9895608
Alignment:
Q  46 aacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||||||| ||||||||| | | |||| |||| ||||| ||||| ||| || | ||| |||||||||||||||||||    
T  9895532 aacctccaacaccatttacctagcaaatcaatattaaattcccttaacttcctcaccgccaaccctccatactcctt 9895608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 45844855 - 45844795
Alignment:
Q  47 acctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaa 107  Q
    ||||||| ||||||||  |||| | |||||||||||||||| |||||||| | ||||||||    
T  45844855 acctccaacaccattttgccaaaagagcaatgttaaactccttcaacctcgttacccccaa 45844795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 9414135 - 9414100
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctc 90  Q
    ||||||||||| |||||||| |||||||||||||||    
T  9414135 caccatttatctaacaaagctatgttaaactccctc 9414100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 2e-53; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 2364871 - 2364988
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2364871 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 2364970  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  2364971 aaccctccatactccttc 2364988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 10323117 - 10323000
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  10323117 cactaacacctttctccacaaagcatccctctccaacaacaacctccaacaccatttacccaacaaagcaatgttaaactccctcagcctcttaaccccc 10323018  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||| ||||||||    
T  10323017 aaccctccaaactccttc 10323000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 19919775 - 19919658
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||    
T  19919775 cactaacacctgtctccacaaagcatccctctccaataacaacctccaacaccatttgcccaacaaggcaatgttaaactccctcaacctcttaaccccc 19919676  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  19919675 aaccctccatactccttc 19919658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 34332361 - 34332244
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  34332361 cactaacacctttctccacaaagcctccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaaccccc 34332262  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  34332261 aaccctccatactccttc 34332244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 16179541 - 16179658
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||||| | ||||||| | || ||||| | |||||||||||| ||||||||  |||||||||| |  |||||||||||||||||| |||| |||    
T  16179541 cactaacaccttacgccacaacccttcactctctactaacaacctccaacaccatttccccaacaaagcgacattaaactccctcaacctcctaactccc 16179640  T
Q  106 aaccctccatactccttc 123  Q
    |||||| |||||||||||    
T  16179641 aacccttcatactccttc 16179658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 962709 - 962592
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||| | | ||||||| |||| ||||| | |||||||||||| ||||||||  | ||||||||||| |||||||||||||| ||| |||| |||    
T  962709 cactaacaccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacaccc 962610  T
Q  106 aaccctccatactccttc 123  Q
    | |||||| |||||||||    
T  962609 atccctccgtactccttc 962592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 3141445 - 3141562
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||| | | ||||||| |||| ||||| | |||||||||||| ||||||||  | ||||||||| |||||||||||||||| ||| |||| |||    
T  3141445 cactaacaccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcagtgttaaactccctcaatctcctaacaccc 3141544  T
Q  106 aaccctccatactccttc 123  Q
    | ||||| ||||||||||    
T  3141545 atccctctatactccttc 3141562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 38774902 - 38774982
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||| ||||||||||||||| || ||||||||| ||||||||||||||| | || |||||||||| ||||||| ||||||    
T  38774902 taacatcctccagcaccatttttctaacaaagcagtgttaaactccctcatcgtcctaacccccaaacctccatgctcctt 38774982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 12341765 - 12341687
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||||||||||||||||| ||||||||| | || ||||||||||||||||||    
T  12341765 taacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 12341687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 14863974 - 14863895
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||| | ||||| ||||  |||||||||||||| ||| ||||||||||||||||| |||||||    
T  14863974 aacatcctccaacaccatttacctaacaatgcaaaattaaactccctcaatctcctaacccccaaccctccagactcctt 14863895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 21740032 - 21739953
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||| | ||||||||||  |||||||||||||| ||| | ||||||||||||||| |||||||    
T  21740032 aacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatctccttacccccaaccctccagactcctt 21739953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 48569570 - 48569471
Alignment:
Q  21 ccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||||| |||| || || | |||||||| ||| |||||||| || | |||||||||||||||||| ||||| ||| |||| |||| |||||||||||||    
T  48569570 ccacaacccatctctatcaactaacaaccgccaacaccatttctctagcaaagcaatgttaaactctctcaatctcctaacacccagccctccatactcc 48569471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 10868234 - 10868313
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||| | ||||||||||  |||||||||||||| ||| | ||||| ||||||||| |||||||    
T  10868234 aacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaatctccttacccctaaccctccagactcctt 10868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 17077829 - 17077754
Alignment:
Q  21 ccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctc 96  Q
    ||||||| |||| ||||| | |||||||||| | ||||||||  |||||||| || ||||||||||||||||||||    
T  17077829 ccacaacccatctctctctactaacaacctctaacaccattttcccaacaaaacagtgttaaactccctcaacctc 17077754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 1231733 - 1231654
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||  ||||||||| ||  |||||||| || |||||| ||||||||||||| |||| ||||||    
T  1231733 aacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacctcctaacccccaaccccccatcctcctt 1231654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 19891331 - 19891385
Alignment:
Q  66 caacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||| |||| ||||||||| ||||||||| |||| |||| |||||||||||||    
T  19891331 caacaatgcaaagttaaactctctcaacctcctaacacccatccctccatactcc 19891385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 48930369 - 48930434
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||||||| | ||||| ||||| ||||||||||||||||||   |||||||| |||||| |||||    
T  48930369 caccatttacctaacaatgcaatattaaactccctcaacctccgcacccccaaacctccaaactcc 48930434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 23604021 - 23604073
Alignment:
Q  70 aaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| ||| |||||||||| |||||| |||||||||||||| |||| ||||||    
T  23604021 aaagaaatattaaactcccgcaaccttttaacccccaaccccccattctcctt 23604073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 20531517 - 20531482
Alignment:
Q  88 ctcaacctcttaacccccaaccctccatactccttc 123  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  20531517 ctcaacctcctaacccccaacccaccatactccttc 20531482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 31675574 - 31675641
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||||| | |||||||||  ||||||||||||||||    | ||||| |||||||||||||||||    
T  31675574 caccatttacctaacaaagcatggttaaactccctcaactgtctcacccctaaccctccatactcctt 31675641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 4e-51; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 27116719 - 27116602
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27116719 cactaacacctttctccacaacgcatcctgctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 27116620  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  27116619 aaccctccatactccttc 27116602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 42514314 - 42514431
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  42514314 cactaacacctttctccacaaagcatccctctctaataacaacctccaacacaatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 42514413  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  42514414 aaccctccatactccttc 42514431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 30731860 - 30731743
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  30731860 cactaatacctgtctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaactccc 30731761  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  30731760 aaccctccatactccttc 30731743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 23238977 - 23239094
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |  |||||||||||||||||||  || ||||||||| |||||||||||||||| ||||||||||| ||| ||||||||    
T  23238977 cactaacacctttctccacaaagattccctctccaataacaaccgtcaacaccatttacccaacaaagcaatgttgaactccctcaatctcgtaaccccc 23239076  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  23239077 aaccctccatactccttc 23239094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 35983333 - 35983220
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||||| |  ||||||||  |||||||| ||||||||||||    
T  35983333 aacacctttctccacaaagcttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactctttcaacctcgtaacccccaacc 35983234  T
Q  110 ctccatactccttc 123  Q
    ||||||||||||||    
T  35983233 ctccatactccttc 35983220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 28535217 - 28535105
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||| ||||||||| ||||| |||| |  |||||||| ||||||||| ||||||||||||    
T  28535217 aacacctttctccacaaagcttccttctccaataacaaccgccaacaccatttacccaac-aagctaaattaaactctctcaacctcgtaacccccaacc 28535119  T
Q  110 ctccatactccttc 123  Q
    ||||||||| ||||    
T  28535118 ctccatacttcttc 28535105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 33170252 - 33170369
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||| | | ||||||| |||| ||||| | |||||||||||| ||||||||  | ||||||||||| |||||||||||||| ||| |||| |||    
T  33170252 cactaacaccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacaccc 33170351  T
Q  106 aaccctccatactccttc 123  Q
    | ||||||||||||||||    
T  33170352 atccctccatactccttc 33170369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 31642109 - 31642195
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctc 96  Q
    ||||||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||||| |  |||||||| |||||||||    
T  31642109 aacacctttctccacaaagcttccttctccaataacaaccgccaacaccatttatccaacaaagctaaattaaactctctcaacctc 31642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 8299692 - 8299614
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||    
T  8299692 taacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccctccatactcc 8299614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 10780831 - 10780909
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||||||||||||||||| ||||||||| | || ||||||||||||||||||    
T  10780831 taacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccctccatactcc 10780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 25856949 - 25856871
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| |||| | ||||||||  |||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||    
T  25856949 taacagcctctaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccctccatactcc 25856871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 42928784 - 42928842
Alignment:
Q  65 ccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttc 123  Q
    ||||||||||||| |||||||| ||||||||| |||| |||| ||||||||||||||||    
T  42928784 ccaacaaagcaatattaaactctctcaacctcctaacacccatccctccatactccttc 42928842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 19338388 - 19338453
Alignment:
Q  48 cctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctcc 113  Q
    |||||| ||||| ||| |||| |||||||||||||||||| |||||||| |||||||||| |||||    
T  19338388 cctccaccaccacttacccaaaaaagcaatgttaaactccttcaacctcctaacccccaaacctcc 19338453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 27165475 - 27165394
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttc 123  Q
    |||||||| ||| ||||||||  ||| ||| |||||||||||||  ||||||||| |||| |||| ||||||||||||||||    
T  27165475 taacaaccgccaacaccatttccccagcaatgcaatgttaaactttctcaacctcctaacacccatccctccatactccttc 27165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 35122179 - 35122136
Alignment:
Q  79 ttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||    
T  35122179 ttaaacttcctcaacctcctaacccccaaccctccagactcctt 35122136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 4e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 35541628 - 35541745
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35541628 cactaacacctttctccacaaagcatccctctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaaccccc 35541727  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||| ||||    
T  35541728 aaccctccatacttcttc 35541745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 1e-48
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 6051197 - 6051314
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  6051197 cactaacacctttctccacaaagcatcccgctccaataacaacctccaacaccatttacccaacaaagcaatgttaaactccttcaacctcttaaccccc 6051296  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  6051297 aaccctccatactccttc 6051314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 49264466 - 49264394
Alignment:
Q  50 tccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| ||||||||| | |||||| ||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  49264466 tccaacaccatttacctaacaaaacaaagttaaactccctcaacctcctaacccccaaccctccagactcctt 49264394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 20796288 - 20796367
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||| | ||||||||||  |||||||||||||||||| |||||||||| |||||| |||||||    
T  20796288 aacatcctccaacaccatttacctaacaaagcaaaattaaactccctcaacctcctaacccccaatcctccagactcctt 20796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 39430908 - 39430987
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||| ||| | |||||||||   |||||||||||||||||| ||||||| ||||||||| |||||||    
T  39430908 aacatcctccaacaccacttacctaacaaagcacaattaaactccctcaacctcctaacccctaaccctccagactcctt 39430987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 13112797 - 13112718
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||||||||  ||||||||| ||  |||||||| || |||||| ||||||||||||| |||| ||||||    
T  13112797 aacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacctcctaacccccaaccccccatcctcctt 13112718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 45270884 - 45270943
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctcca 114  Q
    ||||||||| | ||||| ||||| |||||||||||||||||||  |||||||| ||||||    
T  45270884 caccatttacctaacaatgcaatattaaactccctcaacctctgcacccccaaacctcca 45270943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 45795918 - 45795985
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||||| | ||||||||| | ||||| |||  |||| || | |||||||||||||||||||||||    
T  45795918 caccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatactcctt 45795985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 90; Significance: 6e-44; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 3846 - 3963
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| ||| ||||| ||    
T  3846 cactaacacctttctccacaaagcatccctctccaataacaaccgccaacaccatttacccaacaaagcaatgttaaactccctcaatctcgtaacctcc 3945  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  3946 aaccctccatactccttc 3963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 4e-39; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 4e-39
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 2554200 - 2554317
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    ||||||||||||||||||||| || ||||||||||||||||||  ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||| |    
T  2554200 cactaacacctttctccacaaagcttccctctccaataacaactgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaaccctc 2554299  T
Q  106 aaccctccatactccttc 123  Q
    ||||||||||||||||||    
T  2554300 aaccctccatactccttc 2554317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 24766956 - 24766843
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    |||||||||| |||||| || ||||| || | |||||||| ||| ||||||||| | ||||||||||  |||||||| || |||||| ||||||||||||    
T  24766956 aacacctttcgccacaaagcttccctatctagtaacaaccgccaacaccatttacctaacaaagcaacattaaactctcttaacctcgtaacccccaacc 24766857  T
Q  110 ctccatactccttc 123  Q
    ||||||||||||||    
T  24766856 ctccatactccttc 24766843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 20882543 - 20882465
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||||    
T  20882543 taacaaccgccaacaccatttctccaacaaagcaatgttaaactctctcaacctcctaacacccatccctccatactcc 20882465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 17605844 - 17605766
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  17605844 taacagccaccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 17605766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 21629609 - 21629554
Alignment:
Q  65 ccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  21629609 ccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 21629554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 10576760 - 10576682
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| || ||| ||||||||  |||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  10576760 taacagccgccaacaccatttccccaacaaaacaatgttaaactctctcaacctcctaacacccaaccctccatactcc 10576682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 13938313 - 13938429
Alignment:
Q  6 cactaacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaaccccc 105  Q
    |||||||||| | | ||||||| |||| ||||| | |||||||||||| ||||||||    |||||||||||||||||||| ||||| ||| |||| |||    
T  13938313 cactaacaccctacgccacaac-catctctctctactaacaacctccaacaccattttcttaacaaagcaatgttaaactctctcaatctcctaacaccc 13938411  T
Q  106 aaccctccatactccttc 123  Q
    | |||||| |||||||||    
T  13938412 atccctccgtactccttc 13938429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 31292571 - 31292494
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    ||||| |||||| ||||||||  ||||||||| ||||||||| || | |||||||||||||||||||||||||| ||||    
T  31292571 taacatcctccaacaccatttc-ccaacaaagaaatgttaaattctcccaacctcttaacccccaaccctccatcctcc 31292494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 13086170 - 13086241
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctcca 114  Q
    |||| |||||| ||||||||| | ||||||||||  ||||||||| ||||| || |||||||||||||||||    
T  13086170 aacatcctccaacaccatttacctaacaaagcaacattaaactccttcaacttcctaacccccaaccctcca 13086241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 17577228 - 17577148
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctc--ttaacccccaaccctccatactcc 120  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||| | |||||||   |||| ||||||||||||| ||||    
T  17577228 taacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctataacacccaaccctccatgctcc 17577148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 18682084 - 18682003
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttc 123  Q
    |||||||||||| ||||||||  | ||||||||| ||||||| ||||||||||||  ||  |||||||||  ||||||||||    
T  18682084 taacaacctccaacaccattttcctaacaaagcagtgttaaaatccctcaacctccgaaaacccaaccctttatactccttc 18682003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 17228646 - 17228694
Alignment:
Q  67 aacaaagcaatgttaaactccctcaacctcttaacccccaaccctccat 115  Q
    ||||||| ||| |||||||||||||||||||| |||||||| |||||||    
T  17228646 aacaaagaaatattaaactccctcaacctcttcacccccaaacctccat 17228694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 32197828 - 32197892
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaa 107  Q
    ||||||||||||||||||||| ||| |||||| || ||||||||||| |  ||| ||||||||||    
T  32197828 aacaacctccagcaccatttacccagcaaagccatattaaactccctaattctcctaacccccaa 32197892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 174 - 252
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||| ||||||||  | |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  174 taacaacctccaacaccatttccctaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 9668515 - 9668436
Alignment:
Q  43 aacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| |||||| ||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||| || |||||||    
T  9668515 aacatcctccaacactatttacctaacaaagcaaagttaaactccctcaacctcctaacccccaacccttcagactcctt 9668436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 12646151 - 12646229
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||| ||||||||  | |||||| ||| ||||||||| ||||||||| |||| ||||||||||||||||||    
T  12646151 taacaacctccaacaccattttcctaacaaaacaaagttaaactctctcaacctcctaacacccaaccctccatactcc 12646229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 14440374 - 14440452
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||| | ||| ||||||||  |||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  14440374 taacaaacgccaacaccatttcaccaacagagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 14440452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 11233992 - 11233920
Alignment:
Q  50 tccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    |||| ||||||||| | ||||||||||  ||||||||||||||| || ||||||||||||||||| |||||||    
T  11233992 tccaacaccatttacctaacaaagcaaaattaaactccctcaacttcctaacccccaaccctccagactcctt 11233920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 20004589 - 20004662
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccat 115  Q
    ||||| |||||| |||||||| || ||||||||| ||||||||||||||| | || |||||||||| |||||||    
T  20004589 taacatcctccaacaccatttttctaacaaagcagtgttaaactccctcatcttcctaacccccaaacctccat 20004662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 33583934 - 33583857
Alignment:
Q  45 caacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 122  Q
    ||||||||| |||||||||   |||||||| || |||||||||||||||  | | |||||||||||||||||||||||    
T  33583934 caacctccaacaccatttacttaacaaagctatattaaactccctcaactgccttacccccaaccctccatactcctt 33583857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 35488467 - 35488545
Alignment:
Q  42 taacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcc 120  Q
    |||||||||||| ||||||||| | |  |||||||  ||||||||| ||||| || |||||||||| ||||||| ||||    
T  35488467 taacaacctccaacaccatttacctagtaaagcaacattaaactccttcaacttcctaacccccaaacctccatgctcc 35488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 37445747 - 37445792
Alignment:
Q  65 ccaacaaagcaatgttaaactccctcaacctcttaacccccaaccc 110  Q
    ||||||||||  ||||||||||||||||| || |||||||||||||    
T  37445747 ccaacaaagcggtgttaaactccctcaacttcctaacccccaaccc 37445792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 28253318 - 28253430
Alignment:
Q  10 aacacctttctccacaacgcatccctctccaataacaacctccagcaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaacc 109  Q
    |||||||| | ||| ||| | |||||||||| |||||| | ||| ||||||||  | ||||  || |  |||||||| ||||||||| | || |||||||    
T  28253318 aacaccttacgccataacccttccctctccactaacaaacgccaacaccattttcctaacagggctaaattaaactctctcaacctccttacacccaacc 28253417  T
Q  110 ctccatactcctt 122  Q
    |||||||||||||    
T  28253418 ctccatactcctt 28253430  T

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Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 37437633 - 37437688
Alignment:
Q  55 caccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccc 110  Q
    ||||||||  ||||||||||  ||||||||||||||||| |  |||||||||||||    
T  37437633 caccatttccccaacaaagcggtgttaaactccctcaactttctaacccccaaccc 37437688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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