View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517-Insertion-1 (Length: 1041)
Name: NF5517-Insertion-1
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 51564577 - 51564271
Alignment:
| Q |
8 |
acaatagcatcagattgagtaggcagagttgcattgagagcttccacaaacaatttggccaattgcttcctcacgctcgcaggagcatctaattcctata |
107 |
Q |
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| T |
51564577 |
acaatagcatcagattgagtaggcagggttgcattgagagcttccacaaacaatttggccaattgcttcctcacgctcgcaggagcatctaattcctata |
51564478 |
T |
|
| Q |
108 |
acagacatcgccatttcattacccggaaataataaaaataataagttgaattaatttaggaatcgatgatgaatgagcttacaatgaacatggtggttat |
207 |
Q |
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| T |
51564477 |
acagacatcgccatttcattaaccggaaataataaaaataataagttgaattaatttaggaatcaatgatgaatgagcttacaatgaacatggtggttat |
51564378 |
T |
|
| Q |
208 |
ggatggattgcaatcagctcaatcaaaacgctgactcccacaatagaggatgaaaaaactcagagagagggggtaacgtcaaagtttcagacagggagat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51564377 |
ggatggattgcaatcagctcaatcaaaacgctgactcccacaatagaggatgaaaaaactcagagagagggggtaacgtgaaagtttcagacagggagat |
51564278 |
T |
|
| Q |
308 |
aatagac |
314 |
Q |
| |
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||||||| |
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| T |
51564277 |
aatagac |
51564271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 557 - 888
Target Start/End: Complemental strand, 51563817 - 51563473
Alignment:
| Q |
557 |
atatgaacttataagatataagttaaagctaaaaaatatgttttgccaaagaaacctttgagcttcaagt-------------attgggcattcaactcc |
643 |
Q |
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| T |
51563817 |
atatgaacttataagatataagttaaagctaaaaaatatgttttgtcaaagaaacccttgagcttcaactttgtttttcaagcattgggcattcaactcc |
51563718 |
T |
|
| Q |
644 |
atactctttcacaaatattttcacaacaacaattgattttaataaatattttaagagcgttctaacaagtcataaattaaattggtggtttagtcaagta |
743 |
Q |
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| T |
51563717 |
atactctttgacaaatattttcataacaacaattgattttaataaatattttaagagcgttctaacaagtcataaattaaattggtggtttagtcaaatg |
51563618 |
T |
|
| Q |
744 |
taatggtaatcatatgtttgatatcatggtgagtatgtcagaatctaggtaatccattttgcacaagcaataaaatataacttatgaaaaatcacggtgg |
843 |
Q |
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| T |
51563617 |
taatggtaatcatatatttgatatcatggcgaatatgtcagaatctaggtaatctattttgcaaaagcaataaaatataatttatgaaaaatcacggtgg |
51563518 |
T |
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| Q |
844 |
gttgtcgtgattcaaacacacccaccatgataccagtcatttgat |
888 |
Q |
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| T |
51563517 |
gttgtcgtgattcagacacactcaccatgataccagacatatgat |
51563473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 878 - 1001
Target Start/End: Complemental strand, 51563452 - 51563327
Alignment:
| Q |
878 |
agtcatttgatccaaagactgaacaaacatatagtttggttcaatttagattgcttcatcaaaataatttgattcaattagattatttgtggttcatatg |
977 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51563452 |
agtcgtttgatccaaagactaaacaaacatatagtttggttcaatttagattacttcatcaaaataatttgattcaattagattatttgtggttcatacg |
51563353 |
T |
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| Q |
978 |
ag-attattcattc-tgatgcgatga |
1001 |
Q |
| |
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|| || |||||||| ||||||||||| |
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| T |
51563352 |
agaataattcattcttgatgcgatga |
51563327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 400 - 470
Target Start/End: Complemental strand, 51564007 - 51563937
Alignment:
| Q |
400 |
aatgacctgaagagctaaatttattaatgtttaatttttaatgaatattgcaaggtaaaattgaaataaaa |
470 |
Q |
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| T |
51564007 |
aatgacctgaagagctaaatttattaatgtttaatttttaatgaatattgcaaggtaaaattgaaataaaa |
51563937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 47978824 - 47978889
Alignment:
| Q |
42 |
tgagagcttccacaaacaatttggccaattgcttcctcacgctcgcaggagcatctaattcctata |
107 |
Q |
| |
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||||||||||| |||||| | |||||||||||||| || ||||||||||||||||||||||||| |
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| T |
47978824 |
tgagagcttcccgaaacaacgtagccaattgcttcctgacactcgcaggagcatctaattcctata |
47978889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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