View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517-Insertion-10 (Length: 480)
Name: NF5517-Insertion-10
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517-Insertion-10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 9193935 - 9194407
Alignment:
| Q |
8 |
actttattacctatgaaagatttcattatctcaccatcttcatcttctcatgaaaacccttcatcacaaacaccaacccttcaacaaaagcttcaatttc |
107 |
Q |
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| T |
9193935 |
actttattacctatgaaagatttcattatctcaccatcttcatcttctcatgaaaacccttcatcacaaacaccaacccttcaacaaaagcttcaatttc |
9194034 |
T |
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| Q |
108 |
tactccaaatccaatccgaaaattggatctatgccattatgtggcaaacaacaaaagatgaaaaaggtaaacctttcttatcttggggtgaaggctattt |
207 |
Q |
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| T |
9194035 |
tactccaaatccaatccgaaaattggatctatggcattttgtggcaaacaacaaaagatgaaaaaggtaaacctttcttatcttggggtgaaggctattt |
9194134 |
T |
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| Q |
208 |
tcaaagaaccaaagaaacaacaacttcaaacaaagatgctgaatggttctacgtgatgtcgttgactcgaaaattttccgtaggtaatgcttcttcaatt |
307 |
Q |
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| T |
9194135 |
tcaaggaaccaaagaaacaacaacttcaaacaaagatgctgaatggttctacgtgatgtcgttaactcgaaaattttccataggtaatgcttcttcaatt |
9194234 |
T |
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| Q |
308 |
tcattacctggtaaagcttttgctttagattctgttctttggttgaatagtaaacatgaacttcaaatctataattgtgagagatccaatgaagcacaca |
407 |
Q |
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| T |
9194235 |
tcattacctggtaaagcttttgctttagattctgttctttggttgaatagtaaacatgaacttcaaatctataattgtgagagatccaatgaagcacaca |
9194334 |
T |
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| Q |
408 |
tgcatggaatcgaaacactgatttgtattccgacaactaacggtgtaatcgaaatgggttcttatgacaatat |
480 |
Q |
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| T |
9194335 |
tgcatggaatcgaaacactgatttgtattccgacaactaacggtgtaatcgaaatgggttcttatgacaatat |
9194407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 234 - 480
Target Start/End: Complemental strand, 9213866 - 9213620
Alignment:
| Q |
234 |
caaacaaagatgctgaatggttctacgtgatgtcgttgactcgaaaattttccgtaggtaatgcttcttcaatttcattacctggtaaagcttttgcttt |
333 |
Q |
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| T |
9213866 |
caaacaaagatgctgaatggttctatgtgatgtcgttgactcggattttttccataggtaatgcttcttcaatttcattacctggtaaatcttttgcttt |
9213767 |
T |
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| Q |
334 |
agattctgttctttggttgaatagtaaacatgaacttcaaatctataattgtgagagatccaatgaagcacacatgcatggaatcgaaacactgatttgt |
433 |
Q |
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| T |
9213766 |
agattctgttctttggttgaatagtaaacatgaactgcaaatctataactgtgaaagatccaatgaagcacacgtgcatggaattgaaacattgatttgt |
9213667 |
T |
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| Q |
434 |
attccgacaactaacggtgtaatcgaaatgggttcttatgacaatat |
480 |
Q |
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| T |
9213666 |
attccgacaactaacggtgtaatcgaaatgggttcttacgataatat |
9213620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 9214073 - 9213889
Alignment:
| Q |
57 |
atgaaaacccttcatcacaaacaccaacccttcaacaaaagcttcaatttctactccaaatccaatccgaaaattggatctatgccattatgtggcaaac |
156 |
Q |
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| T |
9214073 |
atgaaaacccttcaccacaaaccctaacccttcaacaaaaacttcaatttctagtccaaacccaatccgaaaattgggtctatgctattttatggcaaac |
9213974 |
T |
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| Q |
157 |
aacaaaagatgaaaaaggtaaacctttcttatcttggggtgaaggctattttcaaagaaccaaagaaacaacaacttcaaacaaa |
241 |
Q |
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| T |
9213973 |
aacaaaagatgaaaaaggtaaacctctcttatcttggggtgaaggctattttcaaggaaccaaagaaacaacaaattcaaacaaa |
9213889 |
T |
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