View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517-Insertion-14 (Length: 114)
Name: NF5517-Insertion-14
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517-Insertion-14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 449295 - 449402
Alignment:
| Q |
7 |
agattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
449295 |
agattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccaca |
449394 |
T |
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| Q |
107 |
tggcgctc |
114 |
Q |
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|||||||| |
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| T |
449395 |
tggcgctc |
449402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 2e-16; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 9330780 - 9330678
Alignment:
| Q |
6 |
cagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccac |
105 |
Q |
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| T |
9330780 |
cagattggtctcaccttccttcagaacttcttcaactaatttcacaaaaact---cgacactgtactttgcctccttcgctttcgttctgtatgttcaac |
9330684 |
T |
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| Q |
106 |
atggcg |
111 |
Q |
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| T |
9330683 |
atggcg |
9330678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 9687624 - 9687516
Alignment:
| Q |
6 |
cagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccac |
105 |
Q |
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||||||||||||| ||||| ||| |||||||||||||| |||||||||||| ||||| ||| ||||| || ||||||||||||| || |||||||| |
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| T |
9687624 |
cagattggtctcagcttccgagagaacttctgcaactaatatcacaaaaactcgacaacagtgaactctatcttcttcgctttcgttccgtctgttccac |
9687525 |
T |
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| Q |
106 |
atggcgctc |
114 |
Q |
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||| |||| |
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| T |
9687524 |
ttggtgctc |
9687516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 9337454 - 9337403
Alignment:
| Q |
6 |
cagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaact |
57 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
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| T |
9337454 |
cagattggtctcaccttccttcagaacttcttcaactaatttcacaaaaact |
9337403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 9710535 - 9710458
Alignment:
| Q |
33 |
ttctgcaactaatttcacaaaaactcagcaacattgagctctacctcattcgctttcgttctgtttgttccacatggc |
110 |
Q |
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| T |
9710535 |
ttctgcaactcatatcccacaaactgaacaacactgagatctacctcattcgcttgcgttccgtatgttccacttggc |
9710458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 9396167 - 9396116
Alignment:
| Q |
6 |
cagattggtctcaacttccttcagagcttctgcaactaatttcacaaaaact |
57 |
Q |
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||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
9396167 |
cagattggtctcagcttccacgtgagcttctgcaactaatatcacaaaaact |
9396116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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