View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517-Insertion-2 (Length: 915)
Name: NF5517-Insertion-2
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 743; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 8 - 832
Target Start/End: Original strand, 44565902 - 44566707
Alignment:
| Q |
8 |
gaaaagaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565902 |
gaaaagaagaataatgttagtaaatacaacatggaaaaatagttttacatagtgcctttaagtatttttggggttgacctggcaatttctcacgtgcatt |
44566001 |
T |
|
| Q |
108 |
gtgacatgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtt |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44566002 |
gtgatatgatggtatcaaccggacgaatattgcgggcctatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtt |
44566101 |
T |
|
| Q |
208 |
tgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctacggtcttcctctagttggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44566102 |
tgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt-------------------tcctctagttggc |
44566182 |
T |
|
| Q |
308 |
acgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566183 |
acgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatc |
44566282 |
T |
|
| Q |
408 |
gttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaag |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566283 |
gttgcagtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaag |
44566382 |
T |
|
| Q |
508 |
tctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566383 |
tctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacc |
44566482 |
T |
|
| Q |
608 |
taatttacaggtgcctttgggtctggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgat |
707 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44566483 |
taatttacaggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgat |
44566582 |
T |
|
| Q |
708 |
acaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgcgtcgtttcct |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44566583 |
acaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgtgtcgtttcct |
44566682 |
T |
|
| Q |
808 |
taatctcttctgtggattcggttag |
832 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
44566683 |
taatctcttctgtggattcggttag |
44566707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 161 - 668
Target Start/End: Complemental strand, 36033142 - 36032639
Alignment:
| Q |
161 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg |
260 |
Q |
| |
|
||||||| ||||||||||| | | || || ||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
|
| Q |
261 |
ctgcagttggactttcattctatagctacggtcttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct |
360 |
Q |
| |
|
||||||||||||||||||| ||| | || ||| ||||||| |||||||| ||| ||||||| |||||| |||| ||||||||| |||||||||||| || |
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|
| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct |
36032943 |
T |
|
| Q |
361 |
tgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgt |
460 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||| ||| | | | ||||| | | ||| | ||||||||| ||||||||||||| |
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| T |
36032942 |
tgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattgctttctgcagtatcttcgt |
36032851 |
T |
|
| Q |
461 |
aagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttc |
560 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| | ||| |||| ||||| |||| || || ||||||||||||| |
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|
| T |
36032850 |
aagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttactctatagcagtgaaaataaatttc |
36032751 |
T |
|
| Q |
561 |
tgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgcctttgggtctggcagtcacatggacatttgctttt |
656 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||| | |||||| |||||||||||| ||||| ||||||||| ||||| | |||||| || ||||||| |
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| T |
36032750 |
tgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttcctttgggtttggcaattacatgggcagttgctttc |
36032651 |
T |
|
| Q |
657 |
ttgctgactgaa |
668 |
Q |
| |
|
|||||||||||| |
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|
| T |
36032650 |
ttgctgactgaa |
36032639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 676 - 832
Target Start/End: Complemental strand, 36032553 - 36032397
Alignment:
| Q |
676 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
775 |
Q |
| |
|
|||||||| |||||| |||| ||||||| || |||| | |||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||| | || |
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|
| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtactcctgtcttccactg |
36032454 |
T |
|
| Q |
776 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
832 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||||| || |||||||||||||| |
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|
| T |
36032453 |
gaaaatggctcttgtgatgtgtgtggtttccttaatctcatccgtggattcggttag |
36032397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 220 - 369
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
220 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctacggtcttcctctagttggcacgtgtcttgag |
319 |
Q |
| |
|
||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| | || ||||| | || |||| || || ||||||||| |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
|
| Q |
320 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
369 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| | ||||| |||||| |
|
|
| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 676 - 832
Target Start/End: Original strand, 20122450 - 20122606
Alignment:
| Q |
676 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
775 |
Q |
| |
|
||||||| ||||||| ||| |||||||| || || ||| ||| | ||||||||||||||||||||||| | ||||||||| |||||| || | || |
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| T |
20122450 |
ggatgaagcattgtcgggttgatacttctcatgcattgaaatcctctccatggtttagatttccctatccgttacaatggggtgttcctgtctttcactg |
20122549 |
T |
|
| Q |
776 |
gaaaatggctattgtgatgtgcgtcgtttccttaatctcttctgtggattcggttag |
832 |
Q |
| |
|
|||||||||| |||| ||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
20122550 |
gaaaatggctcttgtaatgtgtgtggtttccttaatctcatccgtggattcggttag |
20122606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 449 - 508
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
449 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
508 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
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|
| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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