View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517-Insertion-3 (Length: 712)

Name: NF5517-Insertion-3
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517-Insertion-3
NF5517-Insertion-3
[»] scaffold0002 (4 HSPs)
scaffold0002 (7-413)||(164706-165122)
scaffold0002 (485-574)||(164545-164634)
scaffold0002 (631-712)||(164386-164467)
scaffold0002 (571-634)||(164509-164572)
[»] chr6 (5 HSPs)
chr6 (7-413)||(14248604-14249020)
chr6 (17-164)||(14317161-14317313)
chr6 (485-574)||(14249092-14249181)
chr6 (631-712)||(14249259-14249340)
chr6 (571-634)||(14249154-14249217)
[»] scaffold0902 (3 HSPs)
scaffold0902 (7-167)||(3720-3871)
scaffold0902 (334-390)||(265-320)
scaffold0902 (365-410)||(4176-4221)
[»] chr4 (6 HSPs)
chr4 (489-574)||(18342734-18342819)
chr4 (631-712)||(18342897-18342978)
chr4 (571-634)||(18342792-18342855)
chr4 (44-162)||(37245360-37245478)
chr4 (571-634)||(48288736-48288799)
chr4 (523-574)||(48288712-48288763)
[»] chr2 (3 HSPs)
chr2 (489-574)||(36840507-36840592)
chr2 (631-712)||(36840670-36840751)
chr2 (571-634)||(36840565-36840628)
[»] scaffold1652 (1 HSPs)
scaffold1652 (7-95)||(1-89)
[»] chr3 (1 HSPs)
chr3 (631-712)||(46699147-46699228)
[»] scaffold1176 (2 HSPs)
scaffold1176 (7-106)||(1206-1305)
scaffold1176 (274-355)||(1061-1142)
[»] scaffold1118 (1 HSPs)
scaffold1118 (344-402)||(18-79)


Alignment Details
Target: scaffold0002 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 165122 - 164706
Alignment:
Q  7 agaaatagcaggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacaca 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  165122 agaaatagcaggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacaca 165023  T
Q  107 gcggtgtgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaactagaaagttttgagtgaagaaaatattagggttggaaggtt 206  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165022 gccgagtgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaactagaaagttttgagtgaagaaaatattagggttggaaggtt 164923  T
Q  207 atttatatatatgcttaaacgcgtatttatttgttggaagattactgtgttattggnnnnnnnagatatttgttttgtgaggatttattttagattaata 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||    
T  164922 atttatatataagcttaaacgcgtatttatttgttggaagattattgtgttattggtttttttagatatttgttttgtgaggatttattttagattaata 164823  T
Q  307 gatacaagctttacataagaaaatatccctctcccgtaac----------aaacaattgccaatttatagtatttcaattcttcaactgatcttatcata 396  Q
    |||| |||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164822 gatagaagctttacataagaaaatatctctctcccgtaacaaacaataataaacaattgccaatttatagtatttcaattcttcaactgatcttatcata 164723  T
Q  397 taaccactattatatgg 413  Q
    |||||||||||||||||    
T  164722 taaccactattatatgg 164706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 485 - 574
Target Start/End: Complemental strand, 164634 - 164545
Alignment:
Q  485 tcaagtctcaattctcgggctattgcggaaacagttctagttccttttggatttccttcattatcaatgagaaccgccgcattatcatca 574  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  164634 tcaagtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatca 164545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 631 - 712
Target Start/End: Complemental strand, 164467 - 164386
Alignment:
Q  631 ttctaaagatgaatctggtactccttttttgattacatcaacaacaatgtcaccaatataaacataccgtcgattactagct 712  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  164467 ttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagct 164386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 571 - 634
Target Start/End: Complemental strand, 164572 - 164509
Alignment:
Q  571 atcaatgagaaccgccacattatcatcatactttattattataccattactacgttttagttct 634  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  164572 atcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttct 164509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 14248604 - 14249020
Alignment:
Q  7 agaaatagcaggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacaca 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14248604 agaaatagcaggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacaca 14248703  T
Q  107 gcggtgtgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaactagaaagttttgagtgaagaaaatattagggttggaaggtt 206  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248704 gccgagtgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaactagaaagttttgagtgaagaaaatattagggttggaaggtt 14248803  T
Q  207 atttatatatatgcttaaacgcgtatttatttgttggaagattactgtgttattggnnnnnnnagatatttgttttgtgaggatttattttagattaata 306  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||    
T  14248804 atttatatataagcttaaacgcgtatttatttgttggaagattattgtgttattggtttttttagatatttgttttgtgaggatttattttagattaata 14248903  T
Q  307 gatacaagctttacataagaaaatatccctctcccgtaac----------aaacaattgccaatttatagtatttcaattcttcaactgatcttatcata 396  Q
    |||| |||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248904 gatagaagctttacataagaaaatatctctctcccgtaacaaacaataataaacaattgccaatttatagtatttcaattcttcaactgatcttatcata 14249003  T
Q  397 taaccactattatatgg 413  Q
    |||||||||||||||||    
T  14249004 taaccactattatatgg 14249020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 14317161 - 14317313
Alignment:
Q  17 ggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgag 116  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |    
T  14317161 ggtgatggaaacggagaagacttgggtgatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagctgttttgg 14317260  T
Q  117 aagaagccat-----agtagaaagatgaacgagaatgggaatattagggttaa 164  Q
    ||||||||||     |||||||  ||||  |||||||||||||||||||||||    
T  14317261 aagaagccatagtagagtagaattatgatggagaatgggaatattagggttaa 14317313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 14249092 - 14249181
Alignment:
Q  485 tcaagtctcaattctcgggctattgcggaaacagttctagttccttttggatttccttcattatcaatgagaaccgccgcattatcatca 574  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14249092 tcaagtctcaattctcgggctattgcggaaaaaattctagttccttttggatttccttcattatcaatgagaaccaccgcattatcatca 14249181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 14249259 - 14249340
Alignment:
Q  631 ttctaaagatgaatctggtactccttttttgattacatcaacaacaatgtcaccaatataaacataccgtcgattactagct 712  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  14249259 ttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagct 14249340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 571 - 634
Target Start/End: Original strand, 14249154 - 14249217
Alignment:
Q  571 atcaatgagaaccgccacattatcatcatactttattattataccattactacgttttagttct 634  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  14249154 atcaatgagaaccaccgcattatcatcatactttattattataccattactacgttttagttct 14249217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 3720 - 3871
Alignment:
Q  7 agaaatagcaggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacaca 106  Q
    ||||||||||||||||||||||||||| |||| ||||||||||         | |||||| ||||||||||| |||||||||||||||||||||||||||    
T  3720 agaaatagcaggtgatggaaacggagaagacttgggggatgat---------ctagcaacggcggaactcagcaacagtgcaaccaaaagcatcaacaca 3810  T
Q  107 gcggtgtgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaacta 167  Q
    ||||| |  ||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  3811 gcggttttggaagaagccatagtagaaagatgaaggagaataggaaaattagggttaacta 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 265 - 320
Alignment:
Q  334 cctctcccgtaacaaacaattgccaatttatagtatttcaattcttcaactgatctt 390  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  265 cctctccc-taacaaacaattaccaatttatagtatttcaattctttaactgatctt 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 410
Target Start/End: Original strand, 4176 - 4221
Alignment:
Q  365 agtatttcaattcttcaactgatcttatcatataaccactattata 410  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||    
T  4176 agtatttcaaatcttcaactgatcttatcatagaaccactattata 4221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 489 - 574
Target Start/End: Original strand, 18342734 - 18342819
Alignment:
Q  489 gtctcaattctcgggctattgcggaaacagttctagttccttttggatttccttcattatcaatgagaaccgccgcattatcatca 574  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18342734 gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatca 18342819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 18342897 - 18342978
Alignment:
Q  631 ttctaaagatgaatctggtactccttttttgattacatcaacaacaatgtcaccaatataaacataccgtcgattactagct 712  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  18342897 ttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagct 18342978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 571 - 634
Target Start/End: Original strand, 18342792 - 18342855
Alignment:
Q  571 atcaatgagaaccgccacattatcatcatactttattattataccattactacgttttagttct 634  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18342792 atcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttct 18342855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 37245360 - 37245478
Alignment:
Q  44 gatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgagaagaagccatagtagaaagat---gaa 140  Q
    ||||||||||||||||||||||| | ||||  ||| | |||||||||||||||||||| |||| ||||||   | |||||||||||||||||||   |||    
T  37245360 gatgatggtggtgatcgagcaactgtggaatccagcagcagtgcaaccaaaagcatcagcacaacggtgt---aggaagccatagtagaaagatgaagaa 37245456  T
Q  141 cgagaatgggaatattagggtt 162  Q
     |||||||||||||||||||||    
T  37245457 ggagaatgggaatattagggtt 37245478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 571 - 634
Target Start/End: Original strand, 48288736 - 48288799
Alignment:
Q  571 atcaatgagaaccgccacattatcatcatactttattattataccattactacgttttagttct 634  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||    
T  48288736 atcaatgagaaccgccgcattatcatcatactttattattatatcatcaccacgttttagttct 48288799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 48288712 - 48288763
Alignment:
Q  523 agttccttttggatttccttcattatcaatgagaaccgccgcattatcatca 574  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  48288712 agttccttttgaatttccttctttatcaatgagaaccgccgcattatcatca 48288763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 489 - 574
Target Start/End: Original strand, 36840507 - 36840592
Alignment:
Q  489 gtctcaattctcgggctattgcggaaacagttctagttccttttggatttccttcattatcaatgagaaccgccgcattatcatca 574  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36840507 gtctcaattctcgggctattgcggaaaaaattcgagttccttttggatttccttctttatcaatgagaaccgccgcattatcatca 36840592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 36840670 - 36840751
Alignment:
Q  631 ttctaaagatgaatctggtactccttttttgattacatcaacaacaatgtcaccaatataaacataccgtcgattactagct 712  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  36840670 ttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagct 36840751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 571 - 634
Target Start/End: Original strand, 36840565 - 36840628
Alignment:
Q  571 atcaatgagaaccgccacattatcatcatactttattattataccattactacgttttagttct 634  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36840565 atcaatgagaaccgccgcattatcatcatactttattattataccattactacgttttagttct 36840628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 89 - 1
Alignment:
Q  7 agaaatagcaggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaa 95  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  89 agaaatagcaggtgatggaaacggagaagacttgggtgatgatggtggtgatctagcaacggcggaactcagaaacagtgcaaccaaaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 631 - 712
Target Start/End: Original strand, 46699147 - 46699228
Alignment:
Q  631 ttctaaagatgaatctggtactccttttttgattacatcaacaacaatgtcaccaatataaacataccgtcgattactagct 712  Q
    |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  46699147 ttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactagct 46699228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 1305 - 1206
Alignment:
Q  7 agaaatagcaggtgatggaaacggagaggactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacaca 106  Q
    |||||| ||||| |||||||||||||| |||| |||||||| || |||||||  |||||| | | |||| ||||||||||||||||||||||||||||||    
T  1305 agaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtgattaagcaacggtgaaacttagaaacagtgcaaccaaaagcatcaacaca 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 1142 - 1061
Alignment:
Q  274 atttgttttgtgaggatttattttagattaatagatacaagctttacataagaaaatatccctctcccgtaacaaacaattg 355  Q
    |||||||||| |||||||||||||| ||||||  ||| ||||||||| || |||||||||  ||| ||||||||||||||||    
T  1142 atttgttttgagaggatttattttaaattaattaatataagctttacttaggaaaatatctttctgccgtaacaaacaattg 1061  T

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Target: scaffold1118 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 18 - 79
Alignment:
Q  344 aacaaacaattgccaatttatagt---atttcaattcttcaactgatcttatcatataacca 402  Q
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T  18 aacaaacaattgtcagtttatagtagtatttcaattcctcaactgatcttatcataaaacca 79  T

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