View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517-Insertion-7 (Length: 299)
Name: NF5517-Insertion-7
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 73 - 299
Target Start/End: Complemental strand, 30311215 - 30310989
Alignment:
| Q |
73 |
cggaatccactttacatttatttattatttcttgttcaaactgggactgtgagatcaattgaaaagtgagttctcaacattaagagattgtgagatctca |
172 |
Q |
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| T |
30311215 |
cggaatccactttacatttatttattatttcttgttcaaactgagactgtgagatcaattgaaaagtgagttctcaacattaagagattgtgagatctca |
30311116 |
T |
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| Q |
173 |
acaagcaaatggaactcactttatatttccgctaaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttccaaagtgagcatagcagca |
272 |
Q |
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| T |
30311115 |
ataagcaaatggaactcaatttatatttccgctaaatggaacccacttcctagcaaattcagatgtctcagaaagtgcttcaaaagtgagcatagtagca |
30311016 |
T |
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| Q |
273 |
ccatcgtccgagacatagcgtcgcccc |
299 |
Q |
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| T |
30311015 |
ccatcgtccgagacatagcgtcgcccc |
30310989 |
T |
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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 38721013 - 38721098
Alignment:
| Q |
206 |
aaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttccaaagtgagcatagcagcaccatcgtccgagacatagc |
291 |
Q |
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| T |
38721013 |
aaacggaacccacttcctagcaaattcagatgtctcagaaagtgcttcaaaagttagcatagcagcaccatcatccgaaacatagc |
38721098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 13166320 - 13166261
Alignment:
| Q |
233 |
agatgtctcagaaagtgcttccaaagtgagcatagcagcaccatcgtccgagacatagcg |
292 |
Q |
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| T |
13166320 |
agatgtctcagaaagcgcttcaaaagtgagcatagcagcaccatcatccgagacatagcg |
13166261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 9477920 - 9477841
Alignment:
| Q |
210 |
ggaacccacttcctagcaaattcagatgtctcagaaagtgcttccaaagtgagcatagcagcaccatcgtccgagacata |
289 |
Q |
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| T |
9477920 |
ggaacccatttccttgcaaattctgatgtctcggcaagagcttcaaatgtcaacatagcagcaccatcatcagagacata |
9477841 |
T |
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