View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_high_13 (Length: 303)
Name: NF5517_high_13
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 17103749 - 17104047
Alignment:
| Q |
1 |
tgaaaagacaaaagttgtttataaatgtgactagagggagtataacttagagtacgagtcgtctgatctttaatccaatggtggagatttgagactattc |
100 |
Q |
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| T |
17103749 |
tgaaaagacaaaagttgtttataaatgttactagagggagtataacttagagtacgagtcgtctgatctttaatccaatggtggagatttgagactattc |
17103848 |
T |
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| Q |
101 |
gtacagttaaggaatttcaactgtt---ggatgaagattagacgatacatattctaatattatattatgtttttctttaaaatataacttagaatacgag |
197 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
17103849 |
gtacagttaaggaatttcaactgttgttggatgaagattagacgatacatattctaaaattatattatatttttctttaaaatacaacttagaatacgag |
17103948 |
T |
|
| Q |
198 |
ttgtctaatatttaatcgaacggtggagatttgagactgcctgaatctgtgactgcagaggatttaattccaatagactctatgtttgaaatgatgatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17103949 |
ttgtctaatatttaatcgaacggtggagatttgagactgcctgaatctgtgactgcagagaatttaattccaatagactctatgtttgaaatgatgatg |
17104047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 6167992 - 6168028
Alignment:
| Q |
9 |
caaaagttgtttataaatgtgactagagggagtataa |
45 |
Q |
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| T |
6167992 |
caaaagttgtttataaatgtgaccagagggagtataa |
6168028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51267177 - 51267221
Alignment:
| Q |
1 |
tgaaaagacaaaagttgtttataaatgtgactagagggagtataa |
45 |
Q |
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|||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
51267177 |
tgaaaaaacaaaagttgcttataaatgtgaccagagggagtataa |
51267221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 34877700 - 34877667
Alignment:
| Q |
9 |
caaaagttgtttataaatgtgactagagggagta |
42 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
34877700 |
caaaagttgcttataaatgtgactagagggagta |
34877667 |
T |
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