View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_high_2 (Length: 526)
Name: NF5517_high_2
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 26126694 - 26126176
Alignment:
| Q |
1 |
atattccaaattcattactcattaatcattgtcttcaaattactcgtcttgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgtc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126694 |
atattccaaattcattactcattaatcattgtcttcaaattactcgtctcgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgtt |
26126595 |
T |
|
| Q |
101 |
acacaactatccaaaactcagaatcgatgtgagatatctagaagtgggaaaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgc |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126594 |
acacaactatccaaaactcaaaatcgatgtgagatatctagaagtgggaaaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgc |
26126495 |
T |
|
| Q |
201 |
cannnnnnn-gttaccaatcagtgggggtgactaggtttg---------caaggaagccccttcctccaccttatttattgccagttttccatggggtac |
290 |
Q |
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|| ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
26126494 |
cattttttttgttaccaatcagtgggggtaactaggtttgatgcatatgcaagggagccccttcctccaccttatttattgccagttttccacggggtgc |
26126395 |
T |
|
| Q |
291 |
cgctaagttccctcatccagtcatctcagtaaaaagattttatatttttaggttagaagaaagatttggagtaggaaatatattgttggaatcacataaa |
390 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26126394 |
cgctaagttccctcatccagtcatcccagtaaaaagattttatatttttaggttagaagaaagatttggagtaggaaatatattgttggaatcacataaa |
26126295 |
T |
|
| Q |
391 |
tgatgttgttcaaaagacgaaggtgtaagaaatagttcacatgttttggtcgggaggaaagatatgatgctacaaaacactctatcggactttgtgcctt |
490 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26126294 |
tgatgtagttcaaaagacgaaggcgtaagaaatagttcacgtgttttggtcgggaggaaagataggatgctacaaaacactctatcggactttgtgcctt |
26126195 |
T |
|
| Q |
491 |
acgacattctatctttact |
509 |
Q |
| |
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||||||||||||||||||| |
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| T |
26126194 |
acgacattctatctttact |
26126176 |
T |
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