View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5517_high_22 (Length: 228)
Name: NF5517_high_22
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45755341 - 45755120
Alignment:
| Q |
1 |
caccagagtcaaatgtcattaattatcattgaattgaagaaccaagagtttttcaacacttgccgtcaatcgtgccatcaagacatgtatttatagtatt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45755341 |
caccaaagtcaaatgtcattaattatcattgaattgaagaaccaagagtttttcaacacttgccatcaatcgtgccatcaagacatgtatttatagtatt |
45755242 |
T |
|
| Q |
101 |
gttacattttcaatagaacaagtgacgtagaaaattataagttggtatatcatcatatatgaaaagtgtttagttaaacaaagttgacaaaaaatagttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45755241 |
gttacattttcaatagaacaagtgacgtagaaaattataagttggtatatcatcatatatgaaaagtgtttagttaaacaaagttgacaaaaaatagttg |
45755142 |
T |
|
| Q |
201 |
acttaattagctaggtatagat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45755141 |
acttaattagctaggtatagat |
45755120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University