View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_high_7 (Length: 442)

Name: NF5517_high_7
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_high_7
NF5517_high_7
[»] chr4 (18 HSPs)
chr4 (10-423)||(6030665-6031078)
chr4 (282-389)||(3750049-3750155)
chr4 (282-424)||(5570086-5570227)
chr4 (327-424)||(5851975-5852072)
chr4 (324-424)||(5554340-5554440)
chr4 (282-411)||(5885290-5885418)
chr4 (324-424)||(5859202-5859302)
chr4 (194-254)||(5894366-5894426)
chr4 (15-90)||(5552384-5552459)
chr4 (222-271)||(5554222-5554271)
chr4 (15-96)||(5853910-5853991)
chr4 (230-270)||(5565584-5565624)
chr4 (44-101)||(5540212-5540269)
chr4 (28-101)||(5572075-5572148)
chr4 (127-192)||(5895881-5895946)
chr4 (194-270)||(5559994-5560070)
chr4 (282-342)||(5560106-5560165)
chr4 (28-92)||(5584291-5584355)
[»] chr8 (2 HSPs)
chr8 (206-271)||(1486246-1486311)
chr8 (282-416)||(23268519-23268652)
[»] scaffold0454 (1 HSPs)
scaffold0454 (206-254)||(1431-1479)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 6031078 - 6030665
Alignment:
Q  10 atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggatgctttgag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6031078 atcagtaaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagcattgcagagggaatgaaggatgctttgag 6030979  T
Q  110 agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatacttaggtctaggcccataa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6030978 agattgaaaaactgtaaaagacatgtaattaccaatatattgtgggatagcagaaaatttgacggttgagaaatctaaatacttaggtctaggcccataa 6030879  T
Q  210 catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggt-ttttaattgaagcaaca 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6030878 catgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccatgtcttcaatttgagattggttttttaattgaagcaaca 6030779  T
Q  309 atgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagta 408  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6030778 atgagggttga-tcgccaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggaaggaaaacaatgaaagta 6030680  T
Q  409 atgcaattttcattg 423  Q
    |||||||||||||||    
T  6030679 atgcaattttcattg 6030665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 389
Target Start/End: Original strand, 3750049 - 3750155
Alignment:
Q  282 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 381  Q
    |||||||| ||||||||||||||||||||||  |||||| | |||||||||||||||||||||||| ||| || ||||||||  || |||| ||||||||    
T  3750049 tgagattgttttttaattgaagcaacaatgattgttgatcc-tcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagtagc 3750147  T
Q  382 atagaagg 389  Q
    | ||||||    
T  3750148 aaagaagg 3750155  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 424
Target Start/End: Complemental strand, 5570227 - 5570086
Alignment:
Q  282 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 381  Q
    |||||||  |||||| ||| |||||||| ||  |||||| | |||||||||||||| |||| ||||| || || |||| |||  || |||||||||||||    
T  5570227 tgagattattttttagttggagcaacaacgattgttgatcc-tcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagtagc 5570129  T
Q  382 atagaaggcaggaaaacaatgaaagtaatgcaattttcattgt 424  Q
    |||||||| ||||||||||||||| |||||  ||| |||||||    
T  5570128 atagaaggaaggaaaacaatgaaactaatgtgattctcattgt 5570086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 327 - 424
Target Start/End: Complemental strand, 5852072 - 5851975
Alignment:
Q  327 agacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattgt 424  Q
    ||||||||||| |||| ||| | || || ||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||| |||||||    
T  5852072 agacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaattctcattgt 5851975  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5554340 - 5554440
Alignment:
Q  324 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 423  Q
    ||||||||||||||||||| || ||||| || ||||||  | || |||||||| |||||  ||||| ||||||||||||| | ||||| |||||||||||    
T  5554340 tcaagacatttggcagaggcaaaagagatttggaaactattatatatgcagtaatagcagcgaaggaaggaaaacaatgacactaatgtaattttcattg 5554439  T
Q  424 t 424  Q
    |    
T  5554440 t 5554440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 411
Target Start/End: Complemental strand, 5885418 - 5885290
Alignment:
Q  282 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 381  Q
    |||||||| |||||||||| ||||||| |||  |||||| | ||||||||||||||||||| || ||||   | |||| |||   |||||||||||||||    
T  5885418 tgagattgttttttaattggagcaacagtgattgttgatcc-tcaagacatttggcagaggcaagagagttctggaaagtgaaaaaaatgcagtagtagc 5885320  T
Q  382 atagaaggcaggaaaacaatgaaagtaatg 411  Q
    | | ||||  ||||||| ||||||||||||    
T  5885319 agataaggatggaaaacgatgaaagtaatg 5885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 424
Target Start/End: Original strand, 5859202 - 5859302
Alignment:
Q  324 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 423  Q
    |||||||||||||||||||  | ||||| || |||| |||| || ||||||||| || | |||||  |||||||||||||||||| || |||| ||||||    
T  5859202 tcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcagtagcagaagagaagaaaggaaaacaatgaaagtattgtaattctcattg 5859301  T
Q  424 t 424  Q
    |    
T  5859302 t 5859302  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 5894426 - 5894366
Alignment:
Q  194 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 254  Q
    ||||| ||||| ||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  5894426 aggtcaaggccaataacatgtccctcattgtcacaagttacaccactccaattgcagcaag 5894366  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 5552384 - 5552459
Alignment:
Q  15 taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagg 90  Q
    ||||||||  || ||||||||| |||| |||||||||||||||| |||||| ||||  ||||||| ||||||||||    
T  5552384 taaacatgcgggcattgttccagaaattttattaatggaaagatcaagcacttgaagatttgaagcattgcagagg 5552459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 5554222 - 5554271
Alignment:
Q  222 tgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 271  Q
    ||||| |||||||||||||||||||||||||||  ||| |||||||||||    
T  5554222 tgtcacaagttacaccgctccaattgcagcaagctatgctttgattccat 5554271  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 5853991 - 5853910
Alignment:
Q  15 taaacatgtcggtattgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatga 96  Q
    ||||||||  || ||||||||| |||| |||||||||||||||| ||| || ||||  ||||||| |||||||||| |||||    
T  5853991 taaacatgcgggaattgttccaaaaattttattaatggaaagatcaagtacttgaagatttgaagcattgcagaggaaatga 5853910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 5565584 - 5565624
Alignment:
Q  230 gttacaccgctccaattgcagcaaggaatgttttgattcca 270  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  5565584 gttacaccactccaattgcagcaaggaatgctttgattcca 5565624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 5540269 - 5540212
Alignment:
Q  44 tattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat 101  Q
    |||||||||||| || |||||| ||||  ||||||| |||||||||||||||| ||||    
T  5540269 tattaatggaaatatcaagcacttgaagatttgaagcattgcagagggaatgagggat 5540212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 5572148 - 5572075
Alignment:
Q  28 attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagagggaatgaaggat 101  Q
    ||||||||| ||||  |||||||||||| || |||||| ||||  ||||||| |||||||||||| ||| ||||    
T  5572148 attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagagggattgagggat 5572075  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 5895946 - 5895881
Alignment:
Q  127 aagacatgtaattaccaatatattgtgggatagcagaaaatttaacggttgagaaatctaaatact 192  Q
    |||||| ||||||||||||||  ||||||||| |||| ||||||  ||||||| |||| |||||||    
T  5895946 aagacaagtaattaccaatatcatgtgggataacagagaatttattggttgagtaatccaaatact 5895881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 5559994 - 5560070
Alignment:
Q  194 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattcca 270  Q
    ||||| ||||| ||||||||||  ||| ||||| | || ||||| |||||||||||||||| | || ||||||||||    
T  5559994 aggtcaaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttgattcca 5560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 5560106 - 5560165
Alignment:
Q  282 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagagg 342  Q
    |||||||| ||||||||||| ||||||||||  ||||| || ||||||||||||| |||||    
T  5560106 tgagattgttttttaattgatgcaacaatgattgttga-tcctcaagacatttggtagagg 5560165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 5584355 - 5584291
Alignment:
Q  28 attgttccataaatcttattaatggaaagattaagcacctgaatgtttgaagaattgcagaggga 92  Q
    ||||||||| ||||  |||||||||||| || |||||| ||||  ||||||| ||||||||||||    
T  5584355 attgttccagaaatgctattaatggaaatatcaagcacttgaagatttgaagcattgcagaggga 5584291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 1486246 - 1486311
Alignment:
Q  206 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 271  Q
    ||||||||||  ||||||||| |||| ||||| |||||||||||||||| | |||||| |||||||    
T  1486246 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttattccat 1486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 416
Target Start/End: Original strand, 23268519 - 23268652
Alignment:
Q  282 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 381  Q
    |||||||| ||||||||||||||||||  |   |||||| | ||||||||||| ||||||| || |||   || ||||  ||   |||||||||||| ||    
T  23268519 tgagattgttttttaattgaagcaacagagttcgttgatcc-tcaagacatttagcagaggaaagagaagtttggaaaaagaaaaaaatgcagtagtggc 23268617  T
Q  382 atagaaggcaggaaaacaatgaaagtaatgcaatt 416  Q
    | | |||| ||||||||||||||||||||| ||||    
T  23268618 agaaaaggaaggaaaacaatgaaagtaatgtaatt 23268652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 1431 - 1479
Alignment:
Q  206 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 254  Q
    ||||||||||  ||||||||| |||| ||||| ||||||||||||||||    
T  1431 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaag 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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