View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_high_9 (Length: 401)

Name: NF5517_high_9
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_high_9
NF5517_high_9
[»] chr7 (11 HSPs)
chr7 (11-384)||(7631124-7631497)
chr7 (23-134)||(7638024-7638132)
chr7 (134-209)||(23578097-23578172)
chr7 (135-247)||(11776403-11776514)
chr7 (144-241)||(2463445-2463541)
chr7 (162-215)||(36675211-36675264)
chr7 (146-242)||(27938762-27938857)
chr7 (143-247)||(33730108-33730211)
chr7 (182-239)||(7631020-7631076)
chr7 (166-207)||(8547326-8547367)
chr7 (144-244)||(21416200-21416299)
[»] chr2 (9 HSPs)
chr2 (134-247)||(19548134-19548246)
chr2 (134-222)||(40053444-40053531)
chr2 (130-215)||(28226323-28226408)
chr2 (131-247)||(19547856-19547972)
chr2 (187-247)||(10066574-10066633)
chr2 (144-212)||(39334462-39334530)
chr2 (144-215)||(13792581-13792652)
chr2 (247-361)||(40053297-40053408)
chr2 (177-247)||(40053195-40053264)
[»] chr8 (8 HSPs)
chr8 (133-247)||(2954564-2954677)
chr8 (144-247)||(5981498-5981600)
chr8 (134-215)||(2954312-2954393)
chr8 (135-194)||(23125199-23125258)
chr8 (138-247)||(5072975-5073084)
chr8 (257-361)||(5981645-5981747)
chr8 (179-247)||(5981790-5981856)
chr8 (257-321)||(22898166-22898229)
[»] chr6 (5 HSPs)
chr6 (144-240)||(7301647-7301742)
chr6 (142-240)||(15092057-15092154)
chr6 (282-361)||(7301502-7301580)
chr6 (162-208)||(11638107-11638153)
chr6 (150-242)||(28940818-28940911)
[»] chr5 (6 HSPs)
chr5 (133-201)||(26420849-26420917)
chr5 (186-247)||(27856171-27856231)
chr5 (146-203)||(21633404-21633461)
chr5 (146-203)||(21641651-21641708)
chr5 (186-247)||(28296083-28296143)
chr5 (298-361)||(41341350-41341411)
[»] chr3 (9 HSPs)
chr3 (144-247)||(43978631-43978733)
chr3 (133-247)||(43481578-43481690)
chr3 (130-215)||(53595946-53596031)
chr3 (130-215)||(53596261-53596346)
chr3 (144-244)||(43978928-43979027)
chr3 (179-247)||(40195876-40195943)
chr3 (144-215)||(16143438-16143509)
chr3 (134-247)||(32201029-32201141)
chr3 (133-169)||(28978989-28979025)
[»] chr1 (11 HSPs)
chr1 (134-240)||(43834485-43834590)
chr1 (134-247)||(11199913-11200025)
chr1 (135-213)||(8179758-8179836)
chr1 (138-247)||(38637504-38637612)
chr1 (179-247)||(6182407-6182474)
chr1 (144-247)||(4392248-4392350)
chr1 (144-247)||(15327856-15327958)
chr1 (135-213)||(5821717-5821795)
chr1 (130-247)||(26231711-26231825)
chr1 (186-247)||(50391947-50392007)
chr1 (144-240)||(12466283-12466378)
[»] chr4 (8 HSPs)
chr4 (146-247)||(47680623-47680723)
chr4 (244-360)||(26473513-26473628)
chr4 (178-215)||(10396450-10396487)
chr4 (178-247)||(11307635-11307703)
chr4 (145-244)||(11197227-11197325)
chr4 (134-247)||(8445845-8445957)
chr4 (244-361)||(47680753-47680868)
chr4 (179-247)||(51681284-51681352)
[»] scaffold0256 (1 HSPs)
scaffold0256 (144-239)||(13369-13463)
[»] scaffold0548 (1 HSPs)
scaffold0548 (185-247)||(4124-4185)


Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 7631497 - 7631124
Alignment:
Q  11 cacagacaggccggtgacaaattattttaaaaaatttaattctcactttcatcatacaccaacgtgccgagaaaaagaggaaattttcgtaaatacttga 110  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7631497 cacaaacagaccggtgacaaattattttaaaaaatttaattctcactttcatcatacaccaacgtgccgagaaaaagaggaaattttcataaatacttga 7631398  T
Q  111 tttggtccgtaaaattggaatatttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagagga 210  Q
    ||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7631397 tttggtccggaaaattgtaacttttgttgggtttcaagtgtgagtagttaagtcccacatcgactgaaaatggagaaaatgttggatatataagagagga 7631298  T
Q  211 gaccccatatacctaatggcttaaggttttgggtggacgtttggcacattgccgctcccgacgctctctggactccccaacaaactagtattagagccct 310  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7631297 gaccccatatacctaatggcttaagcttttgggtggacgtttggcacattgccgctcccgacgctctctggactccccaacaaactggtattagagccct 7631198  T
Q  311 ggttaagctcggtagggggagcgagagtgggatcctagcctggatcaggctgctgtggtgtctaagcctcttat 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7631197 ggttaagctcggtagggggagcgagagtgggatcctagcctggatcaggctgctgtggtgtctaagcctcttat 7631124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 7638132 - 7638024
Alignment:
Q  23 ggtgacaaattattttaaaaaatttaattctcactttcatcatacaccaacgtgccgagaaaaagaggaaattttcgtaaatacttgatttggtccgtaa 122  Q
    |||||||||||||||  |||||||||||| |||||   |||| | ||||| ||||||||||||||||  |||||| ||||||||||||||||||| ||||    
T  7638132 ggtgacaaattattt--aaaaatttaattttcactca-atcacagaccaatgtgccgagaaaaagagataattttagtaaatacttgatttggtcagtaa 7638036  T
Q  123 aattggaatatt 134  Q
    ||||| ||||||    
T  7638035 aattgtaatatt 7638024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 23578172 - 23578097
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagagg 209  Q
    ||||||||||||| ||||||||  |||||||||||||| | |  |||||||||||| |||||||||||||||||||    
T  23578172 ttgttgggtttcatgtgtgagtgattaagtcccacatcgagtagaaatggagaaaacgttggatatataagagagg 23578097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 11776514 - 11776403
Alignment:
Q  135 tgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaa 234  Q
    ||||||| |||||||||||||  ||| |||||||||| |||   ||||||| |||  ||| |||||||||||||| || ||||||||| ||||  |||||    
T  11776514 tgttgggattcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatataagagagggga-cccatatacataataccttaa 11776416  T
Q  235 ggttttgggtgga 247  Q
    |||||||||||||    
T  11776415 ggttttgggtgga 11776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 2463445 - 2463541
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttg 241  Q
    ||||||||||||| ||| |||||||||    |  |||||||| |||| |||||||||||||||||| || | ||||||||| ||| ||||||||||||    
T  2463445 tcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatataagagagggga-cacatatacctgatgccttaaggttttg 2463541  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 36675211 - 36675264
Alignment:
Q  162 gtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||||||| |||  |||||||||||| ||||||||||||||||| |||||||    
T  36675211 gtcccacatcgactataaatggagaaaacgttggatatataagagatgagaccc 36675264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 27938762 - 27938857
Alignment:
Q  146 aagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgg 242  Q
    ||||||||||  ||| |||| |||||  |||||||| ||| ||  ||||||||||||||| |||||| | ||||||||||| | |||||||||||||    
T  27938762 aagtgtgagtgattatgtccgacatcggctgaaaattgaggaatcgttggatatataagaaaggaga-ctcatatacctaaagccttaaggttttgg 27938857  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 33730211 - 33730108
Alignment:
Q  143 ttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgg 242  Q
    |||||||| |||| ||||||||||||||| |||   |||||   |||||||||||||| |||||||| || |||||| | ||||||  ||||||||||||    
T  33730211 ttcaagtgcgagtggttaagtcccacatcgactatgaatgggttaaatgttggatataaaagagaggtga-cccatagagctaatgcattaaggttttgg 33730113  T
Q  243 gtgga 247  Q
     ||||    
T  33730112 atgga 33730108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 7631020 - 7631076
Alignment:
Q  182 ggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttt 239  Q
    ||||||||||| |||||||||||||| |||| ||||| ||||| ||| ||||||||||    
T  7631020 ggagaaaatgtcggatatataagagatgaga-cccatgtacctgatgccttaaggttt 7631076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 8547367 - 8547326
Alignment:
Q  166 cacatctactgaaaatggagaaaatgttggatatataagaga 207  Q
    |||||| ||| ||||||||||||||||||||||||| |||||    
T  8547367 cacatcaactaaaaatggagaaaatgttggatatatcagaga 8547326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 21416299 - 21416200
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    ||||||||||||  ||| |||||||||| |||  | |||||  |||  ||||||||||||||||||||| |||||| ||| | || |||| |||||||||    
T  21416299 tcaagtgtgagtgattatgtcccacatcaactagacatggaacaaaaattggatatataagagaggaga-cccataaacccattgccttagggttttggg 21416201  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 19548134 - 19548246
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctta 233  Q
    ||||||||||||||| |||||| |||| |||||||||| |||  |||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||    
T  19548134 ttgttgggtttcaagcgtgagtggttatgtcccacatcgactagaaatagaggaaatgttggatatataagagaggaga-cccatatatctaatgtctta 19548232  T
Q  234 aggttttgggtgga 247  Q
    ||||||||||||||    
T  19548233 aggttttgggtgga 19548246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 40053444 - 40053531
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatac 222  Q
    ||||||||  |||||||||| || ||| ||||||||||  || ||||||||| ||||||||||||||||||||||| || |||||||||    
T  40053444 ttgttgggaatcaagtgtgaataattatgtcccacatcggctaaaaatggaggaaatgttggatatataagagagg-gaacccatatac 40053531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 28226323 - 28226408
Alignment:
Q  130 atatttgttgggtttcaagtgtgagtagttaa-gtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||||||||   |||||||||||| ||||| |||||||||| |||  |||||||| ||| |||||||||||||||||||||||||    
T  28226323 atatttgttggaaatcaagtgtgagt-gttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagaggagaccc 28226408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 19547856 - 19547972
Alignment:
Q  131 tatttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagaga-ggagaccccatatacctaatgg 229  Q
    |||||||| ||||||||||||||||| ||| |||  | ||| |||  |||||||  ||||||||||||||||||||| ||||| || |||||| |||||     
T  19547856 tatttgttaggtttcaagtgtgagtaattatgtcttatatcgactagaaatggaagaaatgttggatatataagagagggaga-cctatatacataatgc 19547954  T
Q  230 cttaaggttttgggtgga 247  Q
     ||||||||||| |||||    
T  19547955 tttaaggttttgtgtgga 19547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 10066574 - 10066633
Alignment:
Q  187 aaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||||||||||||||||| |||||| || |||||||||||| |||||| |||||||||||    
T  10066574 aaatgttggatatataagataggagatcc-atatacctaatgccttaagattttgggtgga 10066633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 39334530 - 39334462
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggaga 212  Q
    ||||||||||||  |||||||| ||||||||| ||||| ||| |||||||||||||| || ||||||||    
T  39334530 tcaagtgtgagtgattaagtcctacatctactaaaaatcgaggaaatgttggatataaaaaagaggaga 39334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 13792652 - 13792581
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    ||||||||||||  ||| |||||||||| |||  |||||||| |||| || |||||||||||||||||||||    
T  13792652 tcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagaggagaccc 13792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 40053297 - 40053408
Alignment:
Q  247 acgtttggcacattgccgctcccgacgctctctggactccccaacaaactagtattagagccctggttaagctcggtagggggagcgagagtgggatcct 346  Q
    |||||| || |||||||||||||| ||||| | ||||||||| ||||  | |||| ||||||||  ||| ||||| |  ||||||||  |||||||||||    
T  40053297 acgtttagctcattgccgctcccgtcgctcccaggactcccctacaat-tggtatcagagccctcattaggctcgat--ggggagcggaagtgggatcct 40053393  T
Q  347 agcctggatcaggct 361  Q
    |||||||||||||||    
T  40053394 agcctggatcaggct 40053408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 40053195 - 40053264
Alignment:
Q  177 aaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||||||||||||||| ||| ||||||||||| || ||||||||| | ||| ||||||||||| ||||||    
T  40053195 aaaatggagaaaatgttagatttataagagagggga-cccatatacatgatgtcttaaggttttaggtgga 40053264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 2954677 - 2954564
Alignment:
Q  133 tttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctt 232  Q
    |||||||||||||||||||||||  ||| |||||||||  |||   |||||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||    
T  2954677 tttgttgggtttcaagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaaga-cccatatgcctgatgcctt 2954579  T
Q  233 aaggttttgggtgga 247  Q
    |||||||| ||||||    
T  2954578 aaggttttcggtgga 2954564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 5981600 - 5981498
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    ||||||||||||  ||| |||||||||| |||   ||||||||||| ||||||||||||||||||| || ||||| ||||| ||| ||||||||||||||    
T  5981600 tcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagagggga-cccatgtacctgatgccttaaggttttggg 5981502  T
Q  244 tgga 247  Q
    ||||    
T  5981501 tgga 5981498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 2954393 - 2954312
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||| |||||||||||||||  |||  ||||||||| |||   |||||||||||||||||||||||||||||||||||||    
T  2954393 ttgttgagtttcaagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagaggagaccc 2954312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 23125199 - 23125258
Alignment:
Q  135 tgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttg 194  Q
    ||||||||||||||||||||| ||||||||| ||||| |||  ||||||| |||||||||    
T  23125199 tgttgggtttcaagtgtgagtggttaagtcctacatcaactataaatggataaaatgttg 23125258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 5072975 - 5073084
Alignment:
Q  138 tgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaa-tgttggatatataagagaggagaccccatatacctaatggcttaagg 236  Q
    |||||||||||||||||||||||| || ||||||   |   |||||  |||| |||||||||||||||||||| |  | ||||||| ||||| |||||||    
T  5072975 tgggtttcaagtgtgagtagttaaatctcacatcggttatgaatgggtaaaaatgttggatatataagagaggcg-tctcatatacgtaatgccttaagg 5073073  T
Q  237 ttttgggtgga 247  Q
    |||||||||||    
T  5073074 ttttgggtgga 5073084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 5981747 - 5981645
Alignment:
Q  257 cattgccgctcccgacgctctctggactccccaacaaactagtattagagccctggttaagctcggtagggggagcgagagtgggatcctagcctggatc 356  Q
    ||||||||||| |||||||| | ||||||||| |  || | |||| ||| ||||||||| |||||||  |||||| | ||| ||||||||||  ||||||    
T  5981747 cattgccgctctcgacgctccccggactcccccaagaaatggtatcagaaccctggttaggctcggt--ggggagtgggagcgggatcctagtgtggatc 5981650  T
Q  357 aggct 361  Q
    |||||    
T  5981649 aggct 5981645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 5981856 - 5981790
Alignment:
Q  179 aatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||||| ||| ||||||||||||||||||| || |||||| ||| | || ||||||||||||||||||    
T  5981856 aatggaggaaacgttggatatataagagagggga-cccataaacc-attgccttaaggttttgggtgga 5981790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 22898166 - 22898229
Alignment:
Q  257 cattgccgctcccgacgctctctggactccccaacaaactagtattagagccctggttaagctcg 321  Q
    ||||||||||| |||||||| ||| ||||||||||| | | ||||||||||||| ||||| ||||    
T  22898166 cattgccgctctcgacgctccctgaactccccaacata-tggtattagagcccttgttaaactcg 22898229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 7301742 - 7301647
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggtttt 240  Q
    ||||||||||||| ||| |||||||||| ||| ||||||||||||||||| ||||||||| ||||| || | ||||||||||||  |||||||||||    
T  7301742 tcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagagggga-cacatatacctaatatcttaaggtttt 7301647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 15092057 - 15092154
Alignment:
Q  142 tttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggtttt 240  Q
    |||||||||||||| ||||| | ||||||| | |  |||| |||||||||||||||||||| |||||| ||  |||||||||| |||  ||||||||||    
T  15092057 tttcaagtgtgagtggttaaataccacatcgattagaaattgagaaaatgttggatatatacgagagggga-tccatatacctgatgctttaaggtttt 15092154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 7301580 - 7301502
Alignment:
Q  282 actccccaacaaactagtattagagccctggttaagctcggtagggggagcgagagtgggatcctagcctggatcaggct 361  Q
    |||||||||||||||||||| |||||| |||||| ||||| | ||||||| | ||| |||||||||   |||||||||||    
T  7301580 actccccaacaaactagtatcagagccatggttaggctcgat-gggggagtgggagcgggatcctaatgtggatcaggct 7301502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 11638153 - 11638107
Alignment:
Q  162 gtcccacatctactgaaaatggagaaaatgttggatatataagagag 208  Q
    |||||||||| |||  ||||||||||||| |||||||||||||||||    
T  11638153 gtcccacatcaactagaaatggagaaaatattggatatataagagag 11638107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 28940911 - 28940818
Alignment:
Q  150 gtgagtagttaagtcccacatctact-gaaaatggagaaaa-tgttggatatataagagaggagaccccatatacctaatggcttaaggttttgg 242  Q
    ||||| ||||||||| |||||| ||| ||||||| |||||| ||||||| |||||||||| |||| | | ||||||||||| |||||| ||||||    
T  28940911 gtgagcagttaagtctcacatcgactagaaaatgaagaaaaatgttggacatataagagaagaga-ctcgtatacctaatgtcttaagattttgg 28940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 26420917 - 26420849
Alignment:
Q  133 tttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatat 201  Q
    ||||||||  ||||||||||||||||||||||||||||| |||  |||||||| |||||||||||||||    
T  26420917 tttgttggaattcaagtgtgagtagttaagtcccacatcgactagaaatggaggaaatgttggatatat 26420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 27856171 - 27856231
Alignment:
Q  186 aaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    |||||||||||||||||||||||| |  | ||||||||||||| ||||| ||||||||||||    
T  27856171 aaaatgttggatatataagagaggtg-gctcatatacctaatgccttaaagttttgggtgga 27856231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 21633461 - 21633404
Alignment:
Q  146 aagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataa 203  Q
    ||||||||||  |||||| ||||||| | | |||||||||||||| ||||||||||||    
T  21633461 aagtgtgagtgtttaagttccacatcaattaaaaatggagaaaatattggatatataa 21633404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 21641708 - 21641651
Alignment:
Q  146 aagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataa 203  Q
    ||||||||||  |||||| ||||||| | | |||||||||||||| ||||||||||||    
T  21641708 aagtgtgagtgtttaagttccacatcaattaaaaatggagaaaatattggatatataa 21641651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 28296143 - 28296083
Alignment:
Q  186 aaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||| ||| || ||||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  28296143 aaaatattgaatgtataagagaggtgaccc-atatacctaatctcttaaggttttgggtgga 28296083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 41341350 - 41341411
Alignment:
Q  298 gtattagagccctggttaagctcggtagggggagcgagagtgggatcctagcctggatcaggct 361  Q
    ||||||||||| |||||| |||| ||  |||||||||||| ||||||||||  |||||||||||    
T  41341350 gtattagagccgtggttaggctcagt--ggggagcgagagcgggatcctagtgtggatcaggct 41341411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 43978733 - 43978631
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    ||||||||||||  ||| |||||||||| |||   ||||||| |||  ||||||||||||||||||||| | |||||||||| || ||||||||||||||    
T  43978733 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagaggaga-ctcatatacctattgccttaaggttttggg 43978635  T
Q  244 tgga 247  Q
    ||||    
T  43978634 tgga 43978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 247
Target Start/End: Original strand, 43481578 - 43481690
Alignment:
Q  133 tttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctt 232  Q
    ||||||||||| |||||||||||  ||| ||| |||||| |||   ||||||| ||||||||||||||||||||||| || ||||||||||| |||  ||    
T  43481578 tttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttggatatataagagagggga-cccatatacctgatgcatt 43481675  T
Q  233 aaggttttgggtgga 247  Q
    ||| |||| ||||||    
T  43481676 aagattttaggtgga 43481690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 53595946 - 53596031
Alignment:
Q  130 atatttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||||||||   ||||||| ||||  ||| |||||||||  |||  |||| |||||||||||||||||||||||||||||||||    
T  53595946 atatttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagaccc 53596031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 53596261 - 53596346
Alignment:
Q  130 atatttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||||||||   ||||||| ||||  ||| |||||||||  |||  |||| |||||||||||||||||||||||||||||||||    
T  53596261 atatttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagaccc 53596346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 43979027 - 43978928
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    |||| |||||||  ||| |||||||||| ||| | ||||||| ||| ||||| | ||||||||||||| |||| |||||||| || ||||||||||||||    
T  43979027 tcaaatgtgagtgattatgtcccacatcgactaagaatggaggaaacgttgggtgtataagagaggag-ccccgtatacctattgccttaaggttttggg 43978929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 40195943 - 40195876
Alignment:
Q  179 aatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||| | ||| ||  ||||||||||||||    
T  40195943 aatggaggaaacgttggatatataagagaggaga-cccatatacatgatgcctagaggttttgggtgga 40195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 16143438 - 16143509
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccc 215  Q
    ||||||||||||  | | || |||||||| ||  |||||||| ||||||||||||||||||||| |||||||    
T  16143438 tcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagagacgagaccc 16143509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 32201029 - 32201141
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctta 233  Q
    ||||||||  |||| |||||||  ||| ||| |||||| ||| |||||| || ||||||| |||||| ||||||||||| |  |||||| | ||| ||||    
T  32201029 ttgttgggaatcaaatgtgagtgattatgtctcacatcgactaaaaatgaaggaaatgtttgatatacaagagaggaga-catatatacttgatgcctta 32201127  T
Q  234 aggttttgggtgga 247  Q
    || |||||||||||    
T  32201128 agattttgggtgga 32201141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 28978989 - 28979025
Alignment:
Q  133 tttgttgggtttcaagtgtgagtagttaagtcccaca 169  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  28978989 tttgttgggtttcaagtgtgagtggttaagtctcaca 28979025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 43834485 - 43834590
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctta 233  Q
    ||||||||||||||||||||||  |||  || ||||||  || | ||||||  |||||||| |||||||||||||| ||||| |||||||||||| ||||    
T  43834485 ttgttgggtttcaagtgtgagtgattatatctcacatcggctaagaatggatgaaatgttgaatatataagagaggggaccc-atatacctaatgtctta 43834583  T
Q  234 aggtttt 240  Q
    |||||||    
T  43834584 aggtttt 43834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 11199913 - 11200025
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctta 233  Q
    ||||||||||| |||||||||| |||||||| |||||   ||   ||| |  |||||||||||||||||||||||| || | ||||| ||||||| ||||    
T  11199913 ttgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtga-ctcatatgcctaatgcctta 11200011  T
Q  234 aggttttgggtgga 247  Q
    ||||||||||||||    
T  11200012 aggttttgggtgga 11200025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 8179836 - 8179758
Alignment:
Q  135 tgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagac 213  Q
    ||||||||||  ||||| |||  ||||||| |||||| | | ||||||||||||||||| ||||||||||| |||||||    
T  8179836 tgttgggttttgagtgttagtgattaagtcacacatcgatttaaaatggagaaaatgtttgatatataagataggagac 8179758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 38637504 - 38637612
Alignment:
Q  138 tgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggt 237  Q
    ||||||| ||||||| || ||||||||||| ||   ||  ||||||| ||||||||||  ||||||| |||| ||||  |||||||||||| ||||||||    
T  38637504 tgggttttaagtgtgggtggttaagtcccaaattgcctataaatggataaaatgttggccatataagtgaggtgacct-atatacctaatgccttaaggt 38637602  T
Q  238 tttgggtgga 247  Q
     |||||||||    
T  38637603 attgggtgga 38637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 6182407 - 6182474
Alignment:
Q  179 aatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    |||||||||||||||||||||||| ||||| |||  | |||||||| ||| |||||| |||||||||||    
T  6182407 aatggagaaaatgttggatatatatgagagaaga-tctatatacctgatgccttaagattttgggtgga 6182474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 4392350 - 4392248
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    ||||||||||||  ||| ||| |||||| |||   ||||||| |||  |||||||||||| |||||||| ||||||||||| ||| |||||| ||||||     
T  4392350 tcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagaggaga-cccatatacctgatgccttaagattttgga 4392252  T
Q  244 tgga 247  Q
    ||||    
T  4392251 tgga 4392248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 15327856 - 15327958
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttggg 243  Q
    ||||||||||||  ||| ||| |||||| |||   ||||||| ||| ||| ||||||||||||||| || |||||||||||  || ||| ||||||||||    
T  15327856 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagagggga-cccatatacctgttgtcttgaggttttggg 15327954  T
Q  244 tgga 247  Q
    ||||    
T  15327955 tgga 15327958  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 5821717 - 5821795
Alignment:
Q  135 tgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagac 213  Q
    |||||||||||||||||||||  ||| ||| |||||| |  || ||||||| |||  ||||||||||||||||| ||||    
T  5821717 tgttgggtttcaagtgtgagtgattatgtctcacatcgatcgagaatggaggaaacattggatatataagagagaagac 5821795  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 26231825 - 26231711
Alignment:
Q  130 atatttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatgg 229  Q
    |||| |||||||||| |||||| |||| ||| |||||||||| | |   ||| ||| |||||||  |||||||||||||| ||||| ||||||| | |      
T  26231825 atatatgttgggttttaagtgtaagtaattatgtcccacatcgattaggaattgaggaaatgtt--atatataagagaggggaccc-atataccaattac 26231729  T
Q  230 cttaaggttttgggtgga 247  Q
    ||||||||||||||||||    
T  26231728 cttaaggttttgggtgga 26231711  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 50392007 - 50391947
Alignment:
Q  186 aaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    |||||||||||||||||||| | | ||| | |||||||||||| ||||||||||||| ||||    
T  50392007 aaaatgttggatatataagatatgtgactc-atatacctaatgtcttaaggttttggatgga 50391947  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 12466283 - 12466378
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggtttt 240  Q
    |||||||| |||  ||| |||||||||| |||  |||||||||||| |||||||||||| |||||  | ||  |||||| ||||| |||||||||||    
T  12466283 tcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatatacgagagtgggcct-atatacttaatgccttaaggtttt 12466378  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 47680623 - 47680723
Alignment:
Q  146 aagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtg 245  Q
    ||||||||||  ||| |||||||||| | |  |||||||| |||  ||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||||    
T  47680623 aagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatatgagaggagaccc-atatacctgatgccttaaggttttgggtg 47680721  T
Q  246 ga 247  Q
    ||    
T  47680722 ga 47680723  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 360
Target Start/End: Complemental strand, 26473628 - 26473513
Alignment:
Q  244 tggacgtttggcacattgccgctcccgacgctctctggactccccaacaaactagtattagagccctggttaagctcggtagggggagcgagagtgggat 343  Q
    ||||||||| || ||||| | |||||| ||||| | | |||||||| |||  | |||| |||||| |||||||||||||| ||||||||| ||| |||||    
T  26473628 tggacgtttagcccattggcactcccggcgctccccgaactccccagcaat-tggtatcagagccttggttaagctcggtggggggagcgggagcgggat 26473530  T
Q  344 cctagcctggatcaggc 360  Q
    ||| | |||||||||||    
T  26473529 ccttgtctggatcaggc 26473513  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 10396450 - 10396487
Alignment:
Q  178 aaatggagaaaatgttggatatataagagaggagaccc 215  Q
    |||||||| |||||||||||||||||||||||||||||    
T  10396450 aaatggaggaaatgttggatatataagagaggagaccc 10396487  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 11307703 - 11307635
Alignment:
Q  178 aaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    |||||||| ||||||||||||||| ||||||| || | ||||||||| ||| ||||| ||||||||||||    
T  11307703 aaatggaggaaatgttggatatatgagagagggga-cacatatacctcatgtcttaatgttttgggtgga 11307635  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 11197227 - 11197325
Alignment:
Q  145 caagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggt 244  Q
    |||||||||||  ||| | | |||||| |||  |||||||| ||| |||||||||||||||||||||| |||||| ||| | || |||| ||||||||||    
T  11197227 caagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttggatatataagagaggaga-cccataaacccattgccttagggttttgggt 11197325  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 247
Target Start/End: Original strand, 8445845 - 8445957
Alignment:
Q  134 ttgttgggtttcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggctta 233  Q
    |||||||||||||||| | |||  ||| ||||||||||  |  | |||| || ||||||||||||||||||||| |||  | ||||||| | ||| ||||    
T  8445845 ttgttgggtttcaagtctaagtgattatgtcccacatcggcacacaatgaaggaaatgttggatatataagaga-gaggacacatatacatgatgcctta 8445943  T
Q  234 aggttttgggtgga 247  Q
    ||||||| ||||||    
T  8445944 aggttttaggtgga 8445957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 361
Target Start/End: Original strand, 47680753 - 47680868
Alignment:
Q  244 tggacgtttggcacattgccgctcccgacgctctctggactccccaacaaactagtattagagccctggttaagctcggtagggggagcgagagtgggat 343  Q
    |||||||||  | ||||| ||||||||| ||||    ||| ||||||||| || |||| ||||||||||||| |||| || ||||||||| |||||||||    
T  47680753 tggacgtttaactcattgtcgctcccgatgctcctcagacaccccaacaa-ctggtatcagagccctggttaggctcagt-gggggagcgggagtgggat 47680850  T
Q  344 cctagcctggatcaggct 361  Q
    |||||   ||||||||||    
T  47680851 cctagtgaggatcaggct 47680868  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 51681284 - 51681352
Alignment:
Q  179 aatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    |||||||||||  |||||||||||||| ||| |  ||||||||||  ||  ||||||||||||||||||    
T  51681284 aatggagaaaacattggatatataagaaagggggacccatataccatataccttaaggttttgggtgga 51681352  T

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Target: scaffold0256 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 13369 - 13463
Alignment:
Q  144 tcaagtgtgagtagttaagtcccacatctactgaaaatggagaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttt 239  Q
    |||||||||| |  ||||||| |||||| |||  |||||||| ||||||| ||| || |||||||| ||||| ||||||||||||  |||||||||    
T  13369 tcaagtgtgaatgattaagtcacacatcgactagaaatggaggaaatgttagatttaaaagagaggtgaccc-atatacctaatgctttaaggttt 13463  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 4185 - 4124
Alignment:
Q  185 gaaaatgttggatatataagagaggagaccccatatacctaatggcttaaggttttgggtgga 247  Q
    ||||||||||||||||| ||||||| || | ||||||||| ||| ||||| ||||||||||||    
T  4185 gaaaatgttggatatatgagagagggga-cacatatacctcatgtcttaatgttttgggtgga 4124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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