View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_low_1 (Length: 541)
Name: NF5517_low_1
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Original strand, 1722646 - 1723162
Alignment:
| Q |
14 |
aggggattgtggggtggagaatatacataggtgctaatatatcacatgtttctaggtggcataaaacgtgaattgttcccttgattccatattcatgaga |
113 |
Q |
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| T |
1722646 |
aggggattgtggggtggagaatatacataggtgctaatatatcacatgtttctaggtggcataaaacgtgaattgttcccttgattccatattcatgaga |
1722745 |
T |
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| Q |
114 |
tgctt-ggaagatggagaataatatattgttgaaatttgagtaacgtagtttttatatcatctcttcaagaaagattctcacaaattttaattgttatct |
212 |
Q |
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| T |
1722746 |
tgctttggaagatggagaataatatattgttgaaatttgagtaacgtagtttttatatcatctcttcaagaaagattctcacaaattttaattgttatct |
1722845 |
T |
|
| Q |
213 |
tgtaaaggataaagcaaatcaagccattacttcttattaggacgagtggatggatcactttgtttattttattttcatgtattttctattgggtcaagat |
312 |
Q |
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| T |
1722846 |
tgtaaaggataaagcaaatcaagccattacttcttattaggacgagtggatggatcactttgtttattttattttcatgtattttctattgggtcaagat |
1722945 |
T |
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| Q |
313 |
atattcccgtataatttaatcaatggaaaagacaactggctgacacatggaaggtttatataaacttattaaaaatattcttgaattaatatatacacaa |
412 |
Q |
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| T |
1722946 |
atattcccgtataatttaaccaatggaaaagacaactggctgacacatggaaggtttatataaacttattaaaaatattcttgaattaatatatacacaa |
1723045 |
T |
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| Q |
413 |
tatttcgttatgtgcaataattttaaagtattagtgtacactctaataattttaaaatattcttgaattaaaatgtagannnnnnnactgaaaaaatgta |
512 |
Q |
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| T |
1723046 |
tatgtcgttatgtgcaataattttaaagtattagtgtacactctaataattttaaaatattcttgaattaaaatgtagatttttttacggaaaaaatgta |
1723145 |
T |
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| Q |
513 |
ggtagatgttaaaattg |
529 |
Q |
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| T |
1723146 |
ggtagatgttaaaattg |
1723162 |
T |
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