View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_low_11 (Length: 348)

Name: NF5517_low_11
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_low_11
NF5517_low_11
[»] chr7 (3 HSPs)
chr7 (19-193)||(43939028-43939202)
chr7 (237-303)||(43939308-43939374)
chr7 (295-340)||(43939382-43939427)
[»] chr5 (2 HSPs)
chr5 (237-330)||(34289973-34290060)
chr5 (237-330)||(34296607-34296694)
[»] chr1 (4 HSPs)
chr1 (237-330)||(24489824-24489911)
chr1 (237-330)||(24498158-24498245)
chr1 (237-330)||(32626928-32627015)
chr1 (237-325)||(24485334-24485416)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 43939028 - 43939202
Alignment:
Q  19 agatctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtgacagatagttcaacaaaaccccaccataatacatcatatccc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939028 agatctccatacacaatcctgcttgctatcaccactagtttctccactgtgcttggtgacagatagttcaacaaaaccccaccataatacatcatatccc 43939127  T
Q  119 tagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939128 tagaaagaatatgaacctacatgtacataacaatacattattgcacaagttgagtagataaattccattttgatc 43939202  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 43939308 - 43939374
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatat 43939374  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 43939382 - 43939427
Alignment:
Q  295 tatatatattgccatacacaatggccatcagaatcatagaattatc 340  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  43939382 tatatatattgccatacactatggccatcagaatcattgaattatc 43939427  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 34289973 - 34290060
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 34290060  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 34296607 - 34296694
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 34296694  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 24489911 - 24489824
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 24489824  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 24498245 - 24498158
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 24498158  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 32627015 - 32626928
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcagaatca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||||| ||||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatca 32626928  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 24485416 - 24485334
Alignment:
Q  237 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcag 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  |||||||||||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcag 24485334  T

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