View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5517_low_12 (Length: 338)
Name: NF5517_low_12
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 17103697 - 17103356
Alignment:
| Q |
1 |
aataaaattagaatgagaatacaattttctaagcttaggttcataattgattttgtcatctaaaatgaagaagtgttt-gcagaaataccagcttctcca |
99 |
Q |
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| T |
17103697 |
aataaaattagaattagaatacaattttctaatcttaggttcataattgattttgtcatctaaaatgaagaagtgttttgcagaaataccagcttctcca |
17103598 |
T |
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| Q |
100 |
taggcagcatcagcaggtgaaacctttgagccaacagcagcagcaccaaggagtacagaaagtgctaacctacgagaaaca---ctgacagcaacatcct |
196 |
Q |
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| T |
17103597 |
taggcagcatcagcaggtgaaacctttgagccaacagcagcagcaccaaggagtacagaaagtgctaacctacgagaaacaacactgacagcaacatcct |
17103498 |
T |
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| Q |
197 |
caacatcttgtttctgtgccttgcaaacaatatggtttgatttgttggtaacaatttggcgttgagacaaacttctagatggagttgtaagagcatattg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17103497 |
caacatcttgtttctgtgccttgcaaacaatatggtttggtttgttggtaacaatttggcgctgagacaaacttctagatggagttgtaagagcatattg |
17103398 |
T |
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| Q |
297 |
ggggtgcaagaagcattgtgtagaggccattttgctagagtc |
338 |
Q |
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| T |
17103397 |
ggggtgcaagaagcattgtgtagaggccattttgctagagtc |
17103356 |
T |
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