View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5517_low_13 (Length: 319)
Name: NF5517_low_13
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5517_low_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 46913966 - 46913652
Alignment:
| Q |
5 |
gtagataattcttaacatggtttaatattgtgatagtgatgctacaataactattacgtacaaccgcgatcattatttaaaaccttggcatttaatattt |
104 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913966 |
gtagataactcttaacatggtttagtattgtgatagtgatgccacaataactattacttacaatcgcgatcattatttaaaaccttggcatttaatattt |
46913867 |
T |
|
| Q |
105 |
ttacaccaacctcctggagaaaccactgtggcgatgtggcgttggttattgagcttgggaggcgatggcggagatgaagaggaggagaatgataaagagg |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913866 |
ttacaccaacctcctggagaaactactgtggcgatgtggcgttggttattgagcttcggaggtgatggcggagatgaagaggaggagaatgataaagagg |
46913767 |
T |
|
| Q |
205 |
aggaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagatagcataagagaagttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913766 |
aggaggaagataaaatatcaacaagaaggtgagtgaaagcttgaacaatatacttgtgagtatgtgtaggattaagagcaagatagcataagagaagttc |
46913667 |
T |
|
| Q |
305 |
atgaagataatccca |
319 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
46913666 |
atgaagataatccca |
46913652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University