View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5517_low_16 (Length: 247)

Name: NF5517_low_16
Description: NF5517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5517_low_16
NF5517_low_16
[»] chr2 (13 HSPs)
chr2 (66-224)||(4698032-4698190)
chr2 (68-221)||(10416076-10416229)
chr2 (1-65)||(4697917-4697981)
chr2 (79-219)||(9311061-9311201)
chr2 (97-222)||(4406322-4406446)
chr2 (91-204)||(31714026-31714139)
chr2 (91-204)||(44324232-44324344)
chr2 (91-204)||(808606-808717)
chr2 (91-204)||(39154655-39154768)
chr2 (21-65)||(10415979-10416023)
chr2 (2-65)||(4406202-4406265)
chr2 (129-204)||(45332855-45332929)
chr2 (86-171)||(15000759-15000844)
[»] chr6 (19 HSPs)
chr6 (68-224)||(30130474-30130629)
chr6 (80-204)||(16694086-16694209)
chr6 (129-224)||(33055830-33055925)
chr6 (78-219)||(9815002-9815143)
chr6 (129-225)||(33063309-33063405)
chr6 (147-224)||(27527462-27527539)
chr6 (91-204)||(22014124-22014236)
chr6 (133-204)||(13142018-13142089)
chr6 (91-215)||(15970344-15970465)
chr6 (91-204)||(27684179-27684292)
chr6 (91-204)||(27691498-27691611)
chr6 (129-204)||(17357704-17357779)
chr6 (129-216)||(28040895-28040981)
chr6 (147-216)||(25478173-25478241)
chr6 (91-218)||(6952375-6952500)
chr6 (1-65)||(30130356-30130421)
chr6 (157-216)||(27651222-27651280)
chr6 (156-222)||(8269125-8269191)
chr6 (1-52)||(13142115-13142167)
[»] scaffold0012 (3 HSPs)
scaffold0012 (66-190)||(233534-233658)
scaffold0012 (83-203)||(182835-182954)
scaffold0012 (21-60)||(233714-233753)
[»] chr3 (10 HSPs)
chr3 (68-216)||(9436016-9436160)
chr3 (91-232)||(28058353-28058494)
chr3 (91-232)||(28068778-28068919)
chr3 (79-224)||(5705470-5705613)
chr3 (147-224)||(28104027-28104104)
chr3 (129-222)||(6911235-6911328)
chr3 (81-216)||(17954698-17954832)
chr3 (157-204)||(23397938-23397984)
chr3 (1-65)||(9436213-9436277)
chr3 (161-204)||(19435232-19435274)
[»] chr5 (4 HSPs)
chr5 (79-216)||(15598966-15599102)
chr5 (101-224)||(27198188-27198310)
chr5 (91-204)||(5519400-5519512)
chr5 (91-204)||(42785644-42785756)
[»] chr1 (13 HSPs)
chr1 (129-221)||(16100938-16101030)
chr1 (89-224)||(19657299-19657430)
chr1 (108-204)||(262993-263088)
chr1 (153-221)||(16104420-16104488)
chr1 (82-216)||(17478648-17478779)
chr1 (147-224)||(14650484-14650561)
chr1 (147-224)||(14660275-14660352)
chr1 (156-216)||(17981725-17981785)
chr1 (129-216)||(47050429-47050515)
chr1 (91-204)||(17653322-17653434)
chr1 (1-65)||(262853-262917)
chr1 (129-202)||(29288999-29289071)
chr1 (167-213)||(2885729-2885775)
[»] chr8 (6 HSPs)
chr8 (91-224)||(15925095-15925227)
chr8 (91-204)||(28603039-28603150)
chr8 (91-204)||(4706579-4706691)
chr8 (156-216)||(26340391-26340450)
chr8 (129-204)||(18982613-18982687)
chr8 (147-222)||(26917250-26917323)
[»] chr7 (6 HSPs)
chr7 (129-224)||(28803751-28803846)
chr7 (79-217)||(44060055-44060193)
chr7 (78-204)||(36264145-36264268)
chr7 (147-218)||(18087921-18087992)
chr7 (149-218)||(29466913-29466983)
chr7 (160-194)||(8387120-8387154)
[»] scaffold0713 (1 HSPs)
scaffold0713 (91-224)||(870-1003)
[»] scaffold0007 (1 HSPs)
scaffold0007 (91-204)||(60702-60813)
[»] scaffold0002 (3 HSPs)
scaffold0002 (78-215)||(424261-424396)
scaffold0002 (100-193)||(412910-413002)
scaffold0002 (156-215)||(406886-406944)
[»] chr4 (8 HSPs)
chr4 (79-215)||(27733593-27733728)
chr4 (129-222)||(4763399-4763492)
chr4 (79-216)||(51533782-51533915)
chr4 (79-216)||(18694143-18694276)
chr4 (129-216)||(27561052-27561138)
chr4 (89-204)||(54351797-54351912)
chr4 (129-216)||(5358540-5358626)
chr4 (112-197)||(11512736-11512820)
[»] scaffold0406 (1 HSPs)
scaffold0406 (147-216)||(3862-3930)
[»] scaffold0438 (2 HSPs)
scaffold0438 (156-216)||(10552-10611)
scaffold0438 (147-193)||(7589-7635)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 4698032 - 4698190
Alignment:
Q  66 cctatttgattttggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttc 165  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4698032 cctatttgattttggattaatagaattttatacggttattagttttgtaaatgaacattagattttgagaaacttaattactcgtgtccatgtgtgtttc 4698131  T
Q  166 ccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698132 ccttatagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 4698190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 68 - 221
Target Start/End: Original strand, 10416076 - 10416229
Alignment:
Q  68 tatttgattttggattaatagaattttatacggttactagttttgtaaatgaacattagattttga-gaaacttaattactcgtgcccatgtgtgtttcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10416076 tatttgattttggattaatagaattttatacggttactagttt-gtaaatgaacattagattttgaagaaacttaattactcgtgcccatgtgtgtttcc 10416174  T
Q  167 cttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10416175 cttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 10416229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4697917 - 4697981
Alignment:
Q  1 tttaaaaggtgttataaaagtttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4697917 tttaaaaggtgttataaaaatttcgctaataatttagttcattttattacagtttggttaaacaa 4697981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 9311201 - 9311061
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    |||||| ||||||||| ||||  |||||| |||||||||  |||||| || ||||||||   || || | |||||| |||||||||||||||||||||||    
T  9311201 ggattattagaattttgtacgactactagatttgtaaattgacattaaatcttgagaaaagaaaataattgtgcccttgtgtgtttcccttctagttggt 9311102  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttacccc 219  Q
     ||| ||||||||| ||||||||||| ||||||||||||||    
T  9311101 agtggttgttgtcttctcactaagtccttatgacttacccc 9311061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 4406322 - 4406446
Alignment:
Q  97 acggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctc 196  Q
    |||||||| ||||||||||||  | ||||||||| ||||||  ||| || |||||||  ||||||||||||||||||||||| ||| ||||||||| |||    
T  4406322 acggttacaagttttgtaaatcgatattagattt-gagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctc 4406420  T
Q  197 actaagtctttatgacttaccccttc 222  Q
    ||||||||||| ||||||||| ||||    
T  4406421 actaagtctttgtgacttaccacttc 4406446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 31714026 - 31714139
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||| ||||||| | || | |||||||| ||||||  ||| || |||||||| ||||||||||||||||||| ||||||| ||||||    
T  31714026 ttttatacgggtactagctttgtaagttaaaaattagattt-gagaaaaataaataatcgtgcccttgtgtgtttcccttctagtcggtggtggttgttg 31714124  T
Q  190 tctcctcactaagtc 204  Q
    |||||||||||||||    
T  31714125 tctcctcactaagtc 31714139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 44324232 - 44324344
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||| |||||||| || | |||||||| |||||   ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  44324232 ttttatacggttactagtcttgtaaattaaaaattagattt-gagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttg 44324330  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  44324331 tct-ctcactaagtc 44324344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 808717 - 808606
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgt 190  Q
    ||||||||||||| || |||||||||| || ||||||||| ||||||  ||| || |||||| | |||| ||||||| ||||||||||||||||||||||    
T  808717 ttttatacggttaataattttgtaaattaaaattagattt-gagaaaagtaactaatcgtgctcttgtgggtttcccctctagttggtggtgattgttgt 808619  T
Q  191 ctcctcactaagtc 204  Q
    || |||||||||||    
T  808618 ct-ctcactaagtc 808606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 39154768 - 39154655
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||| ||||||| | || | |||||||| ||||||  ||| || |||||| | ||||||||||||||||||| ||||||| ||||||    
T  39154768 ttttatacgggtactagctttgtaagttaaaaattagattt-gagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttg 39154670  T
Q  190 tctcctcactaagtc 204  Q
    |||||||||||||||    
T  39154669 tctcctcactaagtc 39154655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 10415979 - 10416023
Alignment:
Q  21 tttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    |||| |||||||||| |||||||||||||||||||||||||||||    
T  10415979 tttccctaataatttggttcattttattacagtttggttaaacaa 10416023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 4406202 - 4406265
Alignment:
Q  2 ttaaaaggtgttataaaagtttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    ||||||||||| |||||| |||| ||||| |||||||||| ||||| | |||||||||||||||    
T  4406202 ttaaaaggtgtaataaaactttccctaatgatttagttcagtttatgatagtttggttaaacaa 4406265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 45332855 - 45332929
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    |||||||||  ||| || |||| ||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  45332855 tttgagaaaagtaaataatcgttcccttgtgtgtttcccttctagttggtagtggttgttgtct-ctcactaagtc 45332929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 15000844 - 15000759
Alignment:
Q  86 tagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttct 171  Q
    ||||||||||||||| |||||| |||||||||  |||||| ||||||||| |   || || || ||||| ||||||||||||||||    
T  15000844 tagaattttatacggctactagatttgtaaattgacattaaattttgagagaagaaaataatcatgcccttgtgtgtttcccttct 15000759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 30130474 - 30130629
Alignment:
Q  68 tatttgattttggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttccc 167  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  30130474 tatttgattttagattaatagaattttatacggttactagttt-gtaactgaacattagcttttgagaaacttaattactcgtgctcatgtgtgtttccc 30130572  T
Q  168 ttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30130573 ttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 30130629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 16694209 - 16694086
Alignment:
Q  80 gattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtg 179  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  16694209 gattattagaattttatacggttactagttttgaaaatgaacactagattt-gagaaacttaattacttgtgcccatgtgtgttttccttctagtcggtg 16694111  T
Q  180 gtgattgttgtctcctcactaagtc 204  Q
    ||  |||||||||||||||||||||    
T  16694110 gttgttgttgtctcctcactaagtc 16694086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 33055830 - 33055925
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||||  ||| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33055830 tttgagaaaaataaataatcgtgcccatatgtgtttcccttctatttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 33055925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 9815002 - 9815143
Alignment:
Q  78 tggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttgg 177  Q
    ||||||| ||||||||||||||| || ||| |||||||||  |||||| |||||||||||   || || |||||| | ||||||||||||||||||||||    
T  9815002 tggattattagaattttatacggctattagatttgtaaattgacattaaattttgagaaaagaaaataatcgtgctcttgtgtgtttcccttctagttgg 9815101  T
Q  178 tggtgattgttgtctcctcactaagtctttatgacttacccc 219  Q
    | ||| ||||||||| |||||||||||||| |||||||||||    
T  9815102 tagtggttgttgtctgctcactaagtctttgtgacttacccc 9815143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 33063309 - 33063405
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctta 225  Q
    |||||||||  ||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33063309 tttgagaaaaataaataatcgtgcccatgcgtgtttccattctatttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctta 33063405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 27527462 - 27527539
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27527462 tcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttaccccttctt 27527539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 22014124 - 22014236
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||| |||||||| || | |||||||| |||||   ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  22014124 ttttatacggttactagtcttgtaaattaaaaattagattt-gagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttg 22014222  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  22014223 tct-ctcactaagtc 22014236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 13142089 - 13142018
Alignment:
Q  133 agaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||  |||||| |||||||||||||||||||||    
T  13142089 agaaacttaattactcgtgcccaagtgtgttacccttcttgtcagtggtggttgttgtctcctcactaagtc 13142018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 15970465 - 15970344
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaatt-actcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||  ||||||||| || ||||||||| ||||||  ||||| | |||||||| |||||||| |||||||||||||||||| ||||||    
T  15970465 ttttatacgggtacta--tttgtaaattaaaattagattt-gagaaaagtaatttaatcgtgcccttgtgtgttgcccttctagttggtggtggttgttg 15970369  T
Q  190 tctcctcactaagtctttatgactta 215  Q
    ||| ||||||||||| || |||||||    
T  15970368 tct-ctcactaagtccttgtgactta 15970344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 27684179 - 27684292
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||| ||||||| | || | |||||||| ||||||  ||| || |||||| | ||||||||||||||||||| ||||||| ||||||    
T  27684179 ttttatacgggtactagctttgtaagttaaaaattagattt-gagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttg 27684277  T
Q  190 tctcctcactaagtc 204  Q
    |||||||||||||||    
T  27684278 tctcctcactaagtc 27684292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 27691498 - 27691611
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||| ||||||| | || | |||||||| ||||||  ||| || |||||| | ||||||||||||||||||| ||||||| ||||||    
T  27691498 ttttatacgggtactagctttgtaagttaaaaattagattt-gagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttg 27691596  T
Q  190 tctcctcactaagtc 204  Q
    |||||||||||||||    
T  27691597 tctcctcactaagtc 27691611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 17357704 - 17357779
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    |||||||||  ||| || |||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  17357704 tttgagaaaaataaataatcgtgcccttgtgtgttttccttctagtcggtggtggttgttgtctcctcactaagtc 17357779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 28040895 - 28040981
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||  ||| || ||||| || ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||    
T  28040895 tttgagaaaaataaataatcgtgtccttgtgtgtttcccttctagttggtggtggttgttgtct-ctcactaagtccttgtgacttac 28040981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 25478241 - 25478173
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| || ||||||||    
T  25478241 tcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtct-ctcactaagtccttgtgacttac 25478173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 6952375 - 6952500
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgt 190  Q
    ||||||||||||| ||  ||||||||| || ||| ||||| ||||||   || || |||||||| ||||||||| ||||||| || |||||| |||||||    
T  6952375 ttttatacggttagtaactttgtaaattaaaatttgattt-gagaaaaggaaataatcgtgcccttgtgtgttttccttctacttagtggtggttgttgt 6952473  T
Q  191 ctcctcactaagtctttatgacttaccc 218  Q
    ||| |||||||||| || ||||||||||    
T  6952474 ctc-tcactaagtccttgtgacttaccc 6952500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30130356 - 30130421
Alignment:
Q  1 tttaaaaggtgttataaaag-tttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    ||||||||||||| |||||  |||| |||||| ||| |||||||||||||||||||||||||||||    
T  30130356 tttaaaaggtgttgtaaaacatttccctaatagtttggttcattttattacagtttggttaaacaa 30130421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 27651222 - 27651280
Alignment:
Q  157 gtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||| || ||||||||    
T  27651222 gtgtgtttcctttctagttggtggtggttgttgtct-ctcactaagtccttgtgacttac 27651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 8269191 - 8269125
Alignment:
Q  156 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttc 222  Q
    ||||||||| ||||||||||||| | | || || ||| |||||||||| ||||||||||||||||||    
T  8269191 tgtgtgttttccttctagttggtagcggttcttatcttctcactaagtatttatgacttaccccttc 8269125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13142167 - 13142115
Alignment:
Q  1 tttaaaaggtgttataaaag-tttcgctaataatttagttcattttattacag 52  Q
    |||||||||||||||||||  |||| |||| ||||||||||| ||||||||||    
T  13142167 tttaaaaggtgttataaaaaatttctctaacaatttagttcaatttattacag 13142115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 233658 - 233534
Alignment:
Q  66 cctatttgattttggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttc 165  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  233658 cctatttgattttggattaatagaattttatacggttattagttttgtaaatgagcattaaattttgagaaacttaattactcgtgctcatgtgtgtttc 233559  T
Q  166 ccttctagttggtggtgattgttgt 190  Q
     |||||||||||||||| |||||||    
T  233558 tcttctagttggtggtggttgttgt 233534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 182954 - 182835
Alignment:
Q  83 taatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtg 182  Q
    |||| ||| |||||||| ||||| |||||||||||  | ||||||||| | |||| | ||||| | |||| | ||||||||| |||||||||||||||||    
T  182954 taattgaactttatacgattacttgttttgtaaattgatattagatttgg-gaaagtcaattatttgtgcacttgtgtgttttccttctagttggtggtg 182856  T
Q  183 attgttgtctcctcactaagt 203  Q
    |||||||||||||| ||||||    
T  182855 attgttgtctcctccctaagt 182835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 233753 - 233714
Alignment:
Q  21 tttcgctaataatttagttcattttattacagtttggtta 60  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  233753 tttctctaataatttagttcattttattacagtttggtta 233714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 9436160 - 9436016
Alignment:
Q  68 tatttgattttggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttccc 167  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||   |||||||||| ||    
T  9436160 tatttgattttggattaata---ttttatacggttgctagttttgtaaatgaacattagatttc-agaaacttaattactcgtgtgtatgtgtgttttcc 9436065  T
Q  168 ttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    || |||||||||||| ||||||||||| ||||||||| || ||||||||    
T  9436064 ttatagttggtggtggttgttgtctccccactaagtccttgtgacttac 9436016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 28058494 - 28058353
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| ||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  28058494 ttttatacggttactagccttgtaaattaaaaattagattt-gagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttg 28058396  T
Q  190 tctcctcactaagtctttatgacttaccccttcttacattttt 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  28058395 tctcctcactaagtctttgtgacttaccccttcttacattttt 28058353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 28068919 - 28068778
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| ||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  28068919 ttttatacggttactagccttgtaaattaaaaattagattt-gagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtggtggttgttg 28068821  T
Q  190 tctcctcactaagtctttatgacttaccccttcttacattttt 232  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  28068820 tctcctcactaagtctttgtgacttaccccttcttacattttt 28068778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 5705613 - 5705470
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    |||||||||  ||||||||||||||| | ||||||||||  ||| ||||||| || ||| | ||| | |||||||| |||||||||||||||||||||||    
T  5705613 ggattaatatcattttatacggttaccatttttgtaaattgacaatagattt-gataaagtaaatga-tcgtgcccttgtgtgtttcccttctagttggt 5705516  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5705515 ggtgattgttgtctcctcactaagtctttattacttaccccttctt 5705470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 28104027 - 28104104
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||    
T  28104027 tcgtgcccttgtgtgtttcccttctagttggtggtggttgttttctcctcactaagtctttgtgacttacctcttctt 28104104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 6911328 - 6911235
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttc 222  Q
    |||||||||  ||| || |||||||  ||||||||||||||||||||||| ||| ||||||||| |||||||||||||| ||||||| ||||||    
T  6911328 tttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgacttaacccttc 6911235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 17954832 - 17954698
Alignment:
Q  81 attaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtgg 180  Q
    |||| |||||||||||||||  ||||| |||||||||  ||| ||||||||||||||  ||  || |||||| | | ||||||||||||||||| ||| |    
T  17954832 attattagaattttatacggcaactagatttgtaaattgacaatagattttgagaaatatacataatcgtgctcttttgtgtttcccttctagtgggtag 17954733  T
Q  181 tgattgttgtctcctcactaagtctttatgacttac 216  Q
    || ||||||||| ||||||||||| || ||||||||    
T  17954732 tggttgttgtct-ctcactaagtccttgtgacttac 17954698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23397984 - 23397938
Alignment:
Q  157 gtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  23397984 gtgtgtttcccttctagttggtggtggttgttgtct-ctcactaagtc 23397938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9436277 - 9436213
Alignment:
Q  1 tttaaaaggtgttataaaagtttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    ||||||| |||| |||||| || |  ||||||||||||||||||||| ||||||||||| |||||    
T  9436277 tttaaaaagtgtaataaaaattcccgtaataatttagttcattttatgacagtttggttcaacaa 9436213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 19435232 - 19435274
Alignment:
Q  161 gtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  19435232 gtttcccttctagttggtggtggttgttgtct-ctcactaagtc 19435274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 15598966 - 15599102
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    |||||| |||||||| ||| || |||||| |||||||||  ||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||||    
T  15598966 ggattattagaatttcatatggctactagatttgtaaattgacattagattttgagaaaagtaaataatcgtgcccatgtgtgtttcccttctagttggt 15599065  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||| ||||||||| ||||||||||| || ||||||||    
T  15599066 ggtggttgttgtct-ctcactaagtccttgtgacttac 15599102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 27198310 - 27198188
Alignment:
Q  101 ttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcacta 200  Q
    |||||||||||||||||  | ||||||||| |||||| |||| || | |||| | ||||||||| | ||||||||||||||| |||||||||||||||||    
T  27198310 ttactagttttgtaaattgatattagattt-gagaaagttaactatttgtgctcttgtgtgtttacgttctagttggtggtggttgttgtctcctcacta 27198212  T
Q  201 agtctttatgacttaccccttctt 224  Q
    ||||||| |||||| |||||||||    
T  27198211 agtctttgtgacttgccccttctt 27198188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 5519512 - 5519400
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| ||||||  ||| || |||||||| ||||||||||||||||| ||||||||||||||||    
T  5519512 ttttatacggttactagccttgtaaattaaaaattagattt-gagaaaaataaataatcgtgcccttgtgtgtttcccttctatttggtggtgattgttg 5519414  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  5519413 tct-ctcactaagtc 5519400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 42785644 - 42785756
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| ||||||  ||| || |||||| | ||||||||||||||||||||||||||||||||||    
T  42785644 ttttatacggttactagccttgtaaattaaaaattagattt-gagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttg 42785742  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  42785743 tct-ctcactaagtc 42785756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 16100938 - 16101030
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 221  Q
    |||||||||  ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16100938 tttgagaaaaataaataatcgtgaccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 16101030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 19657430 - 19657299
Alignment:
Q  89 aattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgtt 188  Q
    |||||||||||| ||||||||||||||||  | ||||||||| |||||| | ||| | | ||||   |||||||||||||||||||||||||||||||||    
T  19657430 aattttatacggatactagttttgtaaatctatattagattt-gagaaagtaaataatt-gtgct--tgtgtgtttcccttctagttggtggtgattgtt 19657335  T
Q  189 gtctcctcactaagtctttatgacttaccccttctt 224  Q
    ||||||||||||||||||||||||||||||||||||    
T  19657334 gtctcctcactaagtctttatgacttaccccttctt 19657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 262993 - 263088
Alignment:
Q  108 ttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||    
T  262993 ttttgtaaatgaacattagattc-gagaaacttaattactcgtgcccatatatgtttcccttctagtcggtggtggttgttgtctcctcactaagtc 263088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 16104420 - 16104488
Alignment:
Q  153 ccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16104420 ccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttacccctt 16104488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 17478779 - 17478648
Alignment:
Q  82 ttaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggt 181  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||  ||| || |||||||| |||| |||||||||||||||||||||    
T  17478779 ttaatagaattttatacggttactatttttgtaaattgacattaga-tttgagaaa-gtaaataatcgtgcccttgtgcgtttcccttctagttggtggt 17478682  T
Q  182 gattgttgtctcctcactaagtctttatgacttac 216  Q
    | ||||||||| ||||||||||| || ||||||||    
T  17478681 ggttgttgtct-ctcactaagtccttgtgacttac 17478648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 14650484 - 14650561
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14650484 tcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttaccccttctt 14650561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 14660275 - 14660352
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14660275 tcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctcctcactaagtctttgtgacttaccccttctt 14660352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 17981785 - 17981725
Alignment:
Q  156 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  17981785 tgtgtgtttcccttctagttggtggtgattgttgtctcctcaataagtctttgtgacttac 17981725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 47050515 - 47050429
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||    
T  47050515 tttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtct-ctcactaagtccttgtgacttac 47050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 17653434 - 17653322
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| |||||   ||| || |||||||| ||||||||||||||||||||||||||| ||||||    
T  17653434 ttttatacggttactagccttgtaaattaaaaattagattt-gagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttg 17653336  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  17653335 tct-ctcactaagtc 17653322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 262853 - 262917
Alignment:
Q  1 tttaaaaggtgttataaaagtttcgctaataatttagttcattttattacagtttggttaaacaa 65  Q
    |||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||||||    
T  262853 tttaaaaggtgtcataaaaattcccctaataatttagttcattttatgacagtttggttaaacaa 262917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 29289071 - 29288999
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaag 202  Q
    |||||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  29289071 tttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtct-ctcactaag 29288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 2885729 - 2885775
Alignment:
Q  167 cttctagttggtggtgattgttgtctcctcactaagtctttatgact 213  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||    
T  2885729 cttctagttggtggtggttgtgttctcctcactaagtctttgtgact 2885775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 15925095 - 15925227
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgt 190  Q
    ||||||||||||| ||  ||||||||| || ||| ||||| ||||||  ||| || |||||||  |||||| ||||||||||||||||||||||||||||    
T  15925095 ttttatacggttaataactttgtaaattaaaatttgattt-gagaaaagtaaataatcgtgccgttgtgtgcttcccttctagttggtggtgattgttgt 15925193  T
Q  191 ctcctcactaagtctttatgacttaccccttctt 224  Q
    ||||||||||||||||| ||||||||||||||||    
T  15925194 ctcctcactaagtctttgtgacttaccccttctt 15925227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 28603150 - 28603039
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgt 190  Q
    |||||||||| || ||| ||||||||| || ||||||||| ||||||  ||| || |||||| | |||||||||||||||||||||||||||||||||||    
T  28603150 ttttatacgggtattagctttgtaaattaaaattagattt-gagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgt 28603052  T
Q  191 ctcctcactaagtc 204  Q
    || |||||||||||    
T  28603051 ct-ctcactaagtc 28603039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 4706691 - 4706579
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||||||||||  |||||||| || | |||||||| ||||||  ||| || |||||| | ||||||||||||||||||||||||||||||||||    
T  4706691 ttttatacggttactagccttgtaaattaaaaattagattt-gagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttg 4706593  T
Q  190 tctcctcactaagtc 204  Q
    ||| |||||||||||    
T  4706592 tct-ctcactaagtc 4706579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 26340450 - 26340391
Alignment:
Q  156 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||| || ||||||||    
T  26340450 tgtgtgtttcccttctagttggtggtggttgttgtct-ctcactatgtccttgtgacttac 26340391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 18982613 - 18982687
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 204  Q
    |||||||||  ||| || |||||||| || |||||||||||||||||||| ||| ||||||||| |||||||||||    
T  18982613 tttgagaaaaataaataatcgtgcccttgggtgtttcccttctagttggtagtggttgttgtct-ctcactaagtc 18982687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 26917323 - 26917250
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttc 222  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||| || | |||||| |||||    
T  26917323 tcgtgcccttgtgtgtttcccttctag-tggtggtggttgttgtct-ctcactaagtccttgtaacttactccttc 26917250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 28803751 - 28803846
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||||  ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28803751 tttgagaaaagtaaataatcgtgcccttgtgtatttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttaccccttctt 28803846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 44060193 - 44060055
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    |||||| ||||||||||||||| |||||| |||||||||  |||||| |||||| | ||   || || |||||||| ||||||||||| |||||||||||    
T  44060193 ggattattagaattttatacggctactagatttgtaaatttacattaaattttggggaaagaaaataatcgtgcccttgtgtgtttcctttctagttggt 44060094  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttacc 217  Q
     ||| ||||||||| |||||||||||||| |||||||||    
T  44060093 agtggttgttgtcttctcactaagtctttgtgacttacc 44060055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 204
Target Start/End: Complemental strand, 36264268 - 36264145
Alignment:
Q  78 tggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttgg 177  Q
    ||||||| | ||||||||||||| |||||| |||||||||  | ||||||||| |||||| | ||| | |||||| | |||||||||||||||| |||||    
T  36264268 tggattacttgaattttatacggatactagatttgtaaatctatattagattt-gagaaaataaataa-tcgtgctcttgtgtgtttcccttcttgttgg 36264171  T
Q  178 tggtgattgttgtctcctcactaagtc 204  Q
    ||||| ||||||||| |||||||||||    
T  36264170 tggtggttgttgtct-ctcactaagtc 36264145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 18087921 - 18087992
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccc 218  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| ||| ||||| |||||||| ||||||||||    
T  18087921 tcgtgtccatgtgtatttcccttctagttggtggtggttgttctctgctcacaaagtctttgtgacttaccc 18087992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 29466983 - 29466913
Alignment:
Q  149 gtgcccatgtgtgtttcccttcta-gttggtggtgattgttgtctcctcactaagtctttatgacttaccc 218  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| || || ||||||||||    
T  29466983 gtgcccttgtgtgtttcccttctaagttggtggtggttgttgtctcctcgctaaatcattgtgacttaccc 29466913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 8387154 - 8387120
Alignment:
Q  160 tgtttcccttctagttggtggtgattgttgtctcc 194  Q
    ||||||||||||||||||||||||||||| |||||    
T  8387154 tgtttcccttctagttggtggtgattgttctctcc 8387120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 870 - 1003
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaaca-ttagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttg 189  Q
    |||||||||| |||||| ||||||| | || | |||||||| ||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||| ||    
T  870 ttttatacgggtactagctttgtaagttaaaaattagattt-gagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgatg 968  T
Q  190 tctcctcactaagtctttatgacttaccccttctt 224  Q
    |||||||||||||||||| ||||||||||||||||    
T  969 tctcctcactaagtctttgtgacttaccccttctt 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 60702 - 60813
Alignment:
Q  91 ttttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgt 190  Q
    |||||||||| |||||| ||||||||| || ||||||||| ||||||  |||||| |||||||| ||||||||||||||||||||||||||| |||||||    
T  60702 ttttatacgggtactagctttgtaaattaatattagattt-gagaaaagtaattaatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgt 60800  T
Q  191 ctcctcactaagtc 204  Q
    || |||||||||||    
T  60801 ct-ctcactaagtc 60813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 424396 - 424261
Alignment:
Q  78 tggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttgg 177  Q
    ||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||||  ||||||   |||||| |||| ||||||||| ||||||     
T  424396 tggattactagaattttgtacggttattagttttgtaaatgaacattaga-tttgagaaaagtaattatcggtgcccttgtgcgtttcccttttagttga 424298  T
Q  178 tggtgattgttgtctcctcactaagtctttatgactta 215  Q
    ||||| ||||||||| ||||||| ||| || |||||||    
T  424297 tggtggttgttgtct-ctcactatgtccttgtgactta 424261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 413002 - 412910
Alignment:
Q  100 gttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctc 193  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||  ||||||| |||||||||||||| ||||| |||||  ||||||||||    
T  413002 gttactagttttgtaaatgaacattaga-tttgagaaaagtaattatccgtgcccttgtgtgtttcccttttagttagtggtagttgttgtctc 412910  T

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Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 406944 - 406886
Alignment:
Q  156 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgactta 215  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||||| || |||||||    
T  406944 tgtgtgtttcccttttagttggtggtggttgttgtct-ctcactaagtccttgtgactta 406886  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 27733728 - 27733593
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    |||||| ||||||||||||||| |||||| ||||| |||  ||| ||||||||||||||  ||  || |||||||| ||||||||||||||||||| |||    
T  27733728 ggattattagaattttatacggctactagatttgttaattgacaatagattttgagaaatatacataatcgtgcccttgtgtgtttcccttctagtgggt 27733629  T
Q  179 ggtgattgttgtctcctcactaagtctttatgactta 215  Q
     ||| ||||||||| ||||||||||| || |||||||    
T  27733628 agtggttgttgtct-ctcactaagtccttgtgactta 27733593  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 4763492 - 4763399
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttaccccttc 222  Q
    |||||||||  ||| || |||||||  ||||||||||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||    
T  4763492 tttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgacttaccccttc 4763399  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 51533782 - 51533915
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    ||||||||| |||||||||||||||||| ||||||||||  ||| ||||||| || ||| | ||| | |||||||| |||||||||||||||||| ||||    
T  51533782 ggattaatataattttatacggttactatttttgtaaattgacaatagattt-gataaagtaaataa-tcgtgcccttgtgtgtttcccttctag-tggt 51533878  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||| ||||||||| ||||||||||| || ||||||||    
T  51533879 ggtggttgttgtct-ctcactaagtccttgtgacttac 51533915  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 18694276 - 18694143
Alignment:
Q  79 ggattaatagaattttatacggttactagttttgtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggt 178  Q
    ||||||||| |||||||||||||||||| ||||||||||  ||| ||||||| || ||| | ||| | |||||||| ||||||||||||||| || ||||    
T  18694276 ggattaatataattttatacggttactatttttgtaaattgacaatagattt-gataaagtaaataa-tcgtgcccttgtgtgtttcccttccag-tggt 18694180  T
Q  179 ggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||| ||||||||| ||||||||||| || ||||||||    
T  18694179 ggtggttgttgtct-ctcactaagtccttgtgacttac 18694143  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 27561138 - 27561052
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||  ||| || |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||    
T  27561138 tttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtct-ctcactaagtccttgtgacttac 27561052  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 54351912 - 54351797
Alignment:
Q  89 aattttatacggttactagttttg---taaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgatt 185  Q
    |||||||||||||||||| ||||    |||||  ||||||||||| |||||| | ||| || ||||| | ||| ||||||| ||||||||||||||| ||    
T  54351912 aattttatacggttactattttttatttaaattgacattagattt-gagaaagtaaataac-cgtgctcttgtatgtttcctttctagttggtggtggtt 54351815  T
Q  186 gttgtctcctcactaagtc 204  Q
    ||||||| |||||||||||    
T  54351814 gttgtct-ctcactaagtc 54351797  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 5358626 - 5358540
Alignment:
Q  129 tttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||||  ||| || ||||| || |||||||||| |||||||| ||| ||| |||||||||  |||||||||| |||||||||||    
T  5358626 tttgagaaaactaaataatcgtgtccttgtgtgtttctcttctagtgggtagtggttgttgtctt-tcactaagtccttatgacttac 5358540  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 11512820 - 11512736
Alignment:
Q  112 gtaaatgaacattagattttgagaaacttaattactcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctca 197  Q
    |||||| || ||||||||| ||||||  |||||| ||| |||| |||||||||||||| |||| | || || ||||||||||||||    
T  11512820 gtaaattaaaattagattt-gagaaaagtaattaatcgcgcccttgtgtgtttcccttttagtcgatgatggttgttgtctcctca 11512736  T

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Target: scaffold0406 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 3862 - 3930
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||| || ||||||||    
T  3862 tcgtgcccttgtgtgtttcccttctagttggtagtggttgttgtct-ctcactaagtccttgtgacttac 3930  T

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Target: scaffold0438 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 10611 - 10552
Alignment:
Q  156 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtctttatgacttac 216  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||| ||| || ||||||||    
T  10611 tgtgtgtttcccttctagttggtggtggttgttgtct-ctcactatgtccttgtgacttac 10552  T

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Target: scaffold0438; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 7635 - 7589
Alignment:
Q  147 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctc 193  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  7635 tcgtacccttgtgtgtttcccttctagttggtggtggttgttgtctc 7589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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